(37 nodes) Estrogen-dependent gene expression network (Sclerotinia sclerotiorum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SS1G_06514	Uncharacterized protein. (522 aa)
	SS1G_13859	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (506 aa)
	SS1G_11313	HET domain-containing protein. (634 aa)
	SS1G_10960	Histone H2B; Belongs to the histone H2B family. (139 aa)
	SS1G_10001	Uncharacterized protein. (1074 aa)
	SS1G_09784	GATA-type domain-containing protein. (358 aa)
	SS1G_08937	RPOL9 domain-containing protein. (119 aa)
	SS1G_08504	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (97 aa)
	SS1G_08475	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (151 aa)
	SS1G_08079	RPOL4c domain-containing protein. (146 aa)
	SS1G_07770	Uncharacterized protein. (167 aa)
	SS1G_07559	CYCLIN domain-containing protein; Belongs to the cyclin family. (427 aa)
	SS1G_07451	BHLH domain-containing protein. (295 aa)
	SS1G_07360	Fork-head domain-containing protein. (171 aa)
	SS1G_07307	Uncharacterized protein. (165 aa)
	SS1G_07293	Uncharacterized protein. (828 aa)
	SS1G_06726	Uncharacterized protein. (99 aa)
	SS1G_06696	TATA-box binding protein. (251 aa)
	SS1G_06114	RNA_pol_L_2 domain-containing protein. (124 aa)
	SS1G_05928	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1746 aa)
	SS1G_05855	Uncharacterized protein. (200 aa)
	SS1G_05801	Histone acetyltransferase. (407 aa)
	SS1G_05728	Uncharacterized protein. (475 aa)
	SS1G_05346	RPOLD domain-containing protein. (335 aa)
	SS1G_05040	GATA-type domain-containing protein. (901 aa)
	SS1G_04538	Uncharacterized protein. (1587 aa)
	SS1G_04211	Uncharacterized protein. (715 aa)
	SS1G_03660	Uncharacterized protein. (356 aa)
	SS1G_03009	Uncharacterized protein. (242 aa)
	SS1G_02197	Bromo domain-containing protein. (162 aa)
	SS1G_01580	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family. (336 aa)
	SS1G_01436	Uncharacterized protein. (574 aa)
	SS1G_01416	Uncharacterized protein. (363 aa)
	SS1G_00885	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1267 aa)
	SS1G_00580	Fork-head domain-containing protein. (694 aa)
	SS1G_00199	Protein kinase domain-containing protein. (581 aa)
	dbp2	ATP-dependent RNA helicase dbp2; ATP-dependent RNA helicase involved nonsense-mediated mRNA decay and ribosome biogenesis through rRNA processing. (572 aa)

Your Current Organism:

Sclerotinia sclerotiorum

NCBI taxonomy Id: 665079
Other names: S. sclerotiorum 1980 UF-70, Sclerotinia sclerotiorum 1980 UF-70

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SS1G_00199	SS1G_00885	A7E4H7	A7E6G0	Protein kinase domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.614
SS1G_00199	SS1G_01436	A7E4H7	A7E808	Protein kinase domain-containing protein.	Uncharacterized protein.	0.535
SS1G_00199	SS1G_03009	A7E4H7	A7ECH0	Protein kinase domain-containing protein.	Uncharacterized protein.	0.611
SS1G_00199	SS1G_05346	A7E4H7	A7EJ53	Protein kinase domain-containing protein.	RPOLD domain-containing protein.	0.716
SS1G_00199	SS1G_05928	A7E4H7	A7EKT1	Protein kinase domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.912
SS1G_00199	SS1G_06514	A7E4H7	A7EMG6	Protein kinase domain-containing protein.	Uncharacterized protein.	0.996
SS1G_00199	SS1G_07293	A7E4H7	A7EPP4	Protein kinase domain-containing protein.	Uncharacterized protein.	0.912
SS1G_00199	SS1G_07307	A7E4H7	A7EPQ8	Protein kinase domain-containing protein.	Uncharacterized protein.	0.611
SS1G_00199	SS1G_07559	A7E4H7	A7EQF7	Protein kinase domain-containing protein.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.970
SS1G_00199	SS1G_07770	A7E4H7	A7ER17	Protein kinase domain-containing protein.	Uncharacterized protein.	0.606
SS1G_00199	SS1G_08079	A7E4H7	A7ERX4	Protein kinase domain-containing protein.	RPOL4c domain-containing protein.	0.612
SS1G_00199	SS1G_08475	A7E4H7	A7ET20	Protein kinase domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.605
SS1G_00199	SS1G_08937	A7E4H7	A7EUD0	Protein kinase domain-containing protein.	RPOL9 domain-containing protein.	0.615
SS1G_00580	SS1G_05040	A7E5K5	A7EI98	Fork-head domain-containing protein.	GATA-type domain-containing protein.	0.409
SS1G_00580	SS1G_07360	A7E5K5	A7EPW1	Fork-head domain-containing protein.	Fork-head domain-containing protein.	0.673
SS1G_00885	SS1G_00199	A7E6G0	A7E4H7	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Protein kinase domain-containing protein.	0.614
SS1G_00885	SS1G_01416	A7E6G0	A7E7Y8	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.997
SS1G_00885	SS1G_01436	A7E6G0	A7E808	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.957
SS1G_00885	SS1G_03009	A7E6G0	A7ECH0	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.999
SS1G_00885	SS1G_03660	A7E6G0	A7EEC0	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.919