(51 nodes) Positive regulation of cellular catabolic process network (Bipolaris sorokiniana)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M2SRD8_COCSN	Uncharacterized protein. (335 aa)
	M2TL90_COCSN	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family. (356 aa)
	M2TKQ5_COCSN	RNase_PH domain-containing protein. (346 aa)
	M2TKI1_COCSN	Uncharacterized protein. (898 aa)
	M2TIY1_COCSN	HRDC domain-containing protein. (791 aa)
	M2TG99_COCSN	Uncharacterized protein. (1615 aa)
	M2TEG9_COCSN	Uncharacterized protein. (260 aa)
	M2TD27_COCSN	RBR-type E3 ubiquitin transferase. (513 aa)
	M2SSJ2_COCSN	E3 ubiquitin-protein ligase. (819 aa)
	PAN2	PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent [...] (1137 aa)
	M2QWJ0_COCSN	PUM-HD domain-containing protein. (1004 aa)
	M2R1B4_COCSN	Uncharacterized protein. (2287 aa)
	M2R2K2_COCSN	RNase_PH domain-containing protein. (358 aa)
	M2R454_COCSN	Uncharacterized protein. (417 aa)
	M2R723_COCSN	RPOL4c domain-containing protein. (177 aa)
	M2R7P2_COCSN	Fe2OG dioxygenase domain-containing protein. (657 aa)
	M2R8M7_COCSN	Zn(2)-C6 fungal-type domain-containing protein. (738 aa)
	M2RDW0_COCSN	Nudix hydrolase domain-containing protein. (960 aa)
	M2REY0_COCSN	Uncharacterized protein. (242 aa)
	M2RNW6_COCSN	WD_REPEATS_REGION domain-containing protein. (316 aa)
	M2RPZ3_COCSN	Endo/exonuclease/phosphatase domain-containing protein. (760 aa)
	M2RQQ8_COCSN	SAM domain-containing protein. (613 aa)
	M2RTD0_COCSN	PAT1 domain-containing protein. (865 aa)
	M2RTD2_COCSN	Uncharacterized protein. (896 aa)
	M2RUJ8_COCSN	Uncharacterized protein. (342 aa)
	M2S025_COCSN	ECR1_N domain-containing protein. (344 aa)
	PAN3	PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent 5'-3' exo [...] (844 aa)
	M2S863_COCSN	Uncharacterized protein. (1105 aa)
	M2S867_COCSN	Uncharacterized protein. (620 aa)
	M2S9A8_COCSN	PUM-HD domain-containing protein. (893 aa)
	M2SAF0_COCSN	Sm domain-containing protein. (241 aa)
	M2SB75_COCSN	Tr-type G domain-containing protein. (716 aa)
	M2SCX5_COCSN	Uncharacterized protein. (232 aa)
	M2SEP8_COCSN	Uncharacterized protein. (348 aa)
	M2SMV4_COCSN	Uncharacterized protein. (1118 aa)
	M2SPK5_COCSN	Uncharacterized protein. (269 aa)
	M2SPW1_COCSN	RBR-type E3 ubiquitin transferase. (468 aa)
	M2SQL7_COCSN	Tr-type G domain-containing protein. (1146 aa)
	M2SQX9_COCSN	PUM-HD domain-containing protein. (765 aa)
	M2SRT7_COCSN	Uncharacterized protein. (183 aa)
	M2SS06_COCSN	Uncharacterized protein. (583 aa)
	M2SS37_COCSN	WD_REPEATS_REGION domain-containing protein. (602 aa)
	M2SSB0_COCSN	Uncharacterized protein. (631 aa)
	M2STR9_COCSN	TYR_PHOSPHATASE_2 domain-containing protein. (629 aa)
	M2SU93_COCSN	WD_REPEATS_REGION domain-containing protein. (606 aa)
	M2SV82_COCSN	PAP-associated domain-containing protein. (723 aa)
	M2SYK9_COCSN	Uncharacterized protein. (662 aa)
	M2SYS4_COCSN	Uncharacterized protein. (504 aa)
	M2T232_COCSN	S1 motif domain-containing protein. (171 aa)
	M2T345_COCSN	Uncharacterized protein. (291 aa)
	M2T856_COCSN	RNase_PH domain-containing protein. (258 aa)

Your Current Organism:

Bipolaris sorokiniana

NCBI taxonomy Id: 665912
Other names: B. sorokiniana ND90Pr, Bipolaris sorokiniana ND90Pr, Cochliobolus sativus ND90Pr

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M2QWJ0_COCSN	M2RPZ3_COCSN	M2QWJ0	M2RPZ3	PUM-HD domain-containing protein.	Endo/exonuclease/phosphatase domain-containing protein.	0.510
M2QWJ0_COCSN	M2SYS4_COCSN	M2QWJ0	M2SYS4	PUM-HD domain-containing protein.	Uncharacterized protein.	0.692
M2R1B4_COCSN	M2RDW0_COCSN	M2R1B4	M2RDW0	Uncharacterized protein.	Nudix hydrolase domain-containing protein.	0.566
M2R1B4_COCSN	M2RPZ3_COCSN	M2R1B4	M2RPZ3	Uncharacterized protein.	Endo/exonuclease/phosphatase domain-containing protein.	0.998
M2R1B4_COCSN	M2RTD0_COCSN	M2R1B4	M2RTD0	Uncharacterized protein.	PAT1 domain-containing protein.	0.915
M2R1B4_COCSN	M2S867_COCSN	M2R1B4	M2S867	Uncharacterized protein.	Uncharacterized protein.	0.496
M2R1B4_COCSN	M2S9A8_COCSN	M2R1B4	M2S9A8	Uncharacterized protein.	PUM-HD domain-containing protein.	0.501
M2R1B4_COCSN	M2SAF0_COCSN	M2R1B4	M2SAF0	Uncharacterized protein.	Sm domain-containing protein.	0.410
M2R1B4_COCSN	M2SPK5_COCSN	M2R1B4	M2SPK5	Uncharacterized protein.	Uncharacterized protein.	0.410
M2R1B4_COCSN	M2SSB0_COCSN	M2R1B4	M2SSB0	Uncharacterized protein.	Uncharacterized protein.	0.998
M2R1B4_COCSN	M2SYS4_COCSN	M2R1B4	M2SYS4	Uncharacterized protein.	Uncharacterized protein.	0.998
M2R1B4_COCSN	M2TEG9_COCSN	M2R1B4	M2TEG9	Uncharacterized protein.	Uncharacterized protein.	0.594
M2R1B4_COCSN	PAN2	M2R1B4	M2ST39	Uncharacterized protein.	PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent [...]	0.562
M2R2K2_COCSN	M2RDW0_COCSN	M2R2K2	M2RDW0	RNase_PH domain-containing protein.	Nudix hydrolase domain-containing protein.	0.794
M2R2K2_COCSN	M2REY0_COCSN	M2R2K2	M2REY0	RNase_PH domain-containing protein.	Uncharacterized protein.	0.414
M2R2K2_COCSN	M2S025_COCSN	M2R2K2	M2S025	RNase_PH domain-containing protein.	ECR1_N domain-containing protein.	0.999
M2R2K2_COCSN	M2S867_COCSN	M2R2K2	M2S867	RNase_PH domain-containing protein.	Uncharacterized protein.	0.599
M2R2K2_COCSN	M2SYK9_COCSN	M2R2K2	M2SYK9	RNase_PH domain-containing protein.	Uncharacterized protein.	0.413
M2R2K2_COCSN	M2T345_COCSN	M2R2K2	M2T345	RNase_PH domain-containing protein.	Uncharacterized protein.	0.999
M2R2K2_COCSN	M2T856_COCSN	M2R2K2	M2T856	RNase_PH domain-containing protein.	RNase_PH domain-containing protein.	0.999