(18 nodes) Nuclear periphery network (Bipolaris sorokiniana)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M2T548_COCSN	SAC domain-containing protein. (1115 aa)
	M2SBC1_COCSN	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]; Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Specifically modifies U47 in cytoplasmic tRNAs. (711 aa)
	M2SE80_COCSN	WD_REPEATS_REGION domain-containing protein. (455 aa)
	M2SI77_COCSN	Uncharacterized protein. (444 aa)
	M2SKI3_COCSN	ADF-H domain-containing protein; Belongs to the actin-binding proteins ADF family. (151 aa)
	M2SRP4_COCSN	26S proteasome regulatory subunit RPN1; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins. (899 aa)
	M2STP8_COCSN	WD_REPEATS_REGION domain-containing protein. (328 aa)
	M2SYJ3_COCSN	Proteasome subunit alpha type. (273 aa)
	M2T4D4_COCSN	MPN domain-containing protein. (333 aa)
	M2TAE7_COCSN	DNA damage-binding protein CMR1; DNA-binding protein that binds to both single- and double- stranded DNA. Binds preferentially to UV-damaged DNA. May be involved in DNA-metabolic processes. (522 aa)
	M2T4G9_COCSN	GAR domain-containing protein. (943 aa)
	M2T5I4_COCSN	Uncharacterized protein. (922 aa)
	M2T6X6_COCSN	Uncharacterized protein. (423 aa)
	M2T8X9_COCSN	Exportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family. (1036 aa)
	M2S854_COCSN	Importin N-terminal domain-containing protein. (944 aa)
	TIF34	Eukaryotic translation initiation factor 3 subunit I; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (340 aa)
	M2RP54_COCSN	Uncharacterized protein. (363 aa)
	M2QWC8_COCSN	Importin N-terminal domain-containing protein. (959 aa)

Your Current Organism:

Bipolaris sorokiniana

NCBI taxonomy Id: 665912
Other names: B. sorokiniana ND90Pr, Bipolaris sorokiniana ND90Pr, Cochliobolus sativus ND90Pr

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M2QWC8_COCSN	M2S854_COCSN	M2QWC8	M2S854	Importin N-terminal domain-containing protein.	Importin N-terminal domain-containing protein.	0.619
M2QWC8_COCSN	M2T8X9_COCSN	M2QWC8	M2T8X9	Importin N-terminal domain-containing protein.	Exportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family.	0.674
M2RP54_COCSN	M2T8X9_COCSN	M2RP54	M2T8X9	Uncharacterized protein.	Exportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family.	0.462
M2S854_COCSN	M2QWC8_COCSN	M2S854	M2QWC8	Importin N-terminal domain-containing protein.	Importin N-terminal domain-containing protein.	0.619
M2S854_COCSN	M2T8X9_COCSN	M2S854	M2T8X9	Importin N-terminal domain-containing protein.	Exportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family.	0.646
M2SBC1_COCSN	M2T6X6_COCSN	M2SBC1	M2T6X6	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]; Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Specifically modifies U47 in cytoplasmic tRNAs.	Uncharacterized protein.	0.400
M2SRP4_COCSN	M2SYJ3_COCSN	M2SRP4	M2SYJ3	26S proteasome regulatory subunit RPN1; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	Proteasome subunit alpha type.	0.994
M2SRP4_COCSN	M2T4D4_COCSN	M2SRP4	M2T4D4	26S proteasome regulatory subunit RPN1; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	MPN domain-containing protein.	0.997
M2SRP4_COCSN	TIF34	M2SRP4	M2RUA2	26S proteasome regulatory subunit RPN1; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	Eukaryotic translation initiation factor 3 subunit I; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	0.498
M2SYJ3_COCSN	M2SRP4_COCSN	M2SYJ3	M2SRP4	Proteasome subunit alpha type.	26S proteasome regulatory subunit RPN1; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	0.994
M2SYJ3_COCSN	M2T4D4_COCSN	M2SYJ3	M2T4D4	Proteasome subunit alpha type.	MPN domain-containing protein.	0.985
M2T4D4_COCSN	M2SRP4_COCSN	M2T4D4	M2SRP4	MPN domain-containing protein.	26S proteasome regulatory subunit RPN1; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	0.997
M2T4D4_COCSN	M2SYJ3_COCSN	M2T4D4	M2SYJ3	MPN domain-containing protein.	Proteasome subunit alpha type.	0.985
M2T4D4_COCSN	M2TAE7_COCSN	M2T4D4	M2TAE7	MPN domain-containing protein.	DNA damage-binding protein CMR1; DNA-binding protein that binds to both single- and double- stranded DNA. Binds preferentially to UV-damaged DNA. May be involved in DNA-metabolic processes.	0.448
M2T4D4_COCSN	TIF34	M2T4D4	M2RUA2	MPN domain-containing protein.	Eukaryotic translation initiation factor 3 subunit I; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	0.726
M2T6X6_COCSN	M2SBC1_COCSN	M2T6X6	M2SBC1	Uncharacterized protein.	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]; Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Specifically modifies U47 in cytoplasmic tRNAs.	0.400
M2T8X9_COCSN	M2QWC8_COCSN	M2T8X9	M2QWC8	Exportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family.	Importin N-terminal domain-containing protein.	0.674
M2T8X9_COCSN	M2RP54_COCSN	M2T8X9	M2RP54	Exportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family.	Uncharacterized protein.	0.462
M2T8X9_COCSN	M2S854_COCSN	M2T8X9	M2S854	Exportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family.	Importin N-terminal domain-containing protein.	0.646
M2TAE7_COCSN	M2T4D4_COCSN	M2TAE7	M2T4D4	DNA damage-binding protein CMR1; DNA-binding protein that binds to both single- and double- stranded DNA. Binds preferentially to UV-damaged DNA. May be involved in DNA-metabolic processes.	MPN domain-containing protein.	0.448