(42 nodes) Catalytic step 2 spliceosome network (Bipolaris sorokiniana)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M2SJ78_COCSN	WD_REPEATS_REGION domain-containing protein. (334 aa)
	M2R2K7_COCSN	Uncharacterized protein. (263 aa)
	M2R1M5_COCSN	Pre-mRNA-splicing factor; Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome. (1449 aa)
	M2QTI6_COCSN	Uncharacterized protein. (319 aa)
	M2QT72_COCSN	Sm domain-containing protein. (93 aa)
	M2SN07_COCSN	Sm domain-containing protein. (136 aa)
	M2SPP0_COCSN	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (166 aa)
	M2SPY2_COCSN	PSP domain-containing protein. (570 aa)
	M2SRD5_COCSN	Uncharacterized protein. (485 aa)
	M2RL76_COCSN	Uncharacterized protein. (291 aa)
	M2RXM1_COCSN	WD_REPEATS_REGION domain-containing protein. (359 aa)
	M2RZN6_COCSN	Small nuclear ribonucleoprotein Sm D2. (117 aa)
	M2S3J2_COCSN	Matrin-type domain-containing protein. (235 aa)
	M2S4Q7_COCSN	Sm domain-containing protein. (210 aa)
	M2SRJ8_COCSN	Uncharacterized protein. (719 aa)
	M2SS21_COCSN	Uncharacterized protein. (266 aa)
	M2ST20_COCSN	Uncharacterized protein. (520 aa)
	M2SW37_COCSN	RRM domain-containing protein. (383 aa)
	M2SYJ6_COCSN	Uncharacterized protein; Belongs to the DEAD box helicase family. (399 aa)
	M2T1P5_COCSN	SF3b1 domain-containing protein. (1190 aa)
	M2T2J4_COCSN	Pinin_SDK_memA domain-containing protein. (315 aa)
	M2T3R3_COCSN	Uncharacterized protein. (234 aa)
	M2T4V1_COCSN	Uncharacterized protein. (531 aa)
	M2T4X0_COCSN	MPN domain-containing protein. (2375 aa)
	M2T597_COCSN	RRM domain-containing protein. (155 aa)
	M2T5Q4_COCSN	Uncharacterized protein. (837 aa)
	M2TAS2_COCSN	RRM domain-containing protein. (127 aa)
	M2TFU5_COCSN	PPIase cyclophilin-type domain-containing protein. (503 aa)
	M2S7T6_COCSN	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
	M2TNB2_COCSN	Uncharacterized protein. (222 aa)
	M2S7X8_COCSN	Small nuclear ribonucleoprotein G. (84 aa)
	M2S7Y2_COCSN	Tr-type G domain-containing protein. (993 aa)
	M2SAM3_COCSN	Zn(2)-C6 fungal-type domain-containing protein. (761 aa)
	M2SBA3_COCSN	Uncharacterized protein. (262 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
	M2SE80_COCSN	WD_REPEATS_REGION domain-containing protein. (455 aa)
	M2SEL2_COCSN	MI domain-containing protein. (859 aa)
	M2SFU5_COCSN	Uncharacterized protein. (684 aa)
	M2SGU5_COCSN	WD_REPEATS_REGION domain-containing protein. (499 aa)
	M2RHX7_COCSN	Uncharacterized protein. (930 aa)
	M2SHB2_COCSN	Uncharacterized protein; Belongs to the DEAD box helicase family. (704 aa)
	M2SIM7_COCSN	Uncharacterized protein. (636 aa)

Your Current Organism:

Bipolaris sorokiniana

NCBI taxonomy Id: 665912
Other names: B. sorokiniana ND90Pr, Bipolaris sorokiniana ND90Pr, Cochliobolus sativus ND90Pr

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM3	M2QT72_COCSN	M2SDD3	M2QT72	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Sm domain-containing protein.	0.984
LSM3	M2R2K7_COCSN	M2SDD3	M2R2K7	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.949
LSM3	M2RHX7_COCSN	M2SDD3	M2RHX7	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.946
LSM3	M2RXM1_COCSN	M2SDD3	M2RXM1	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	WD_REPEATS_REGION domain-containing protein.	0.488
LSM3	M2RZN6_COCSN	M2SDD3	M2RZN6	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein Sm D2.	0.994
LSM3	M2S3J2_COCSN	M2SDD3	M2S3J2	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Matrin-type domain-containing protein.	0.876
LSM3	M2S4Q7_COCSN	M2SDD3	M2S4Q7	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Sm domain-containing protein.	0.989
LSM3	M2S7T6_COCSN	M2SDD3	M2S7T6	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM3	M2S7X8_COCSN	M2SDD3	M2S7X8	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein G.	0.981
LSM3	M2S7Y2_COCSN	M2SDD3	M2S7Y2	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Tr-type G domain-containing protein.	0.990
LSM3	M2SAM3_COCSN	M2SDD3	M2SAM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Zn(2)-C6 fungal-type domain-containing protein.	0.475
LSM3	M2SBA3_COCSN	M2SDD3	M2SBA3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.884
LSM3	M2SFU5_COCSN	M2SDD3	M2SFU5	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.953
LSM3	M2SHB2_COCSN	M2SDD3	M2SHB2	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.576
LSM3	M2SN07_COCSN	M2SDD3	M2SN07	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Sm domain-containing protein.	0.999
LSM3	M2SPY2_COCSN	M2SDD3	M2SPY2	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	PSP domain-containing protein.	0.891
LSM3	M2ST20_COCSN	M2SDD3	M2ST20	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.916
LSM3	M2SW37_COCSN	M2SDD3	M2SW37	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	RRM domain-containing protein.	0.457
LSM3	M2T1P5_COCSN	M2SDD3	M2T1P5	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	SF3b1 domain-containing protein.	0.869
LSM3	M2T3R3_COCSN	M2SDD3	M2T3R3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.586