(10 nodes) HOPS complex network (Bipolaris sorokiniana)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M2TJG9_COCSN	CNH domain-containing protein. (1071 aa)
	M2TH60_COCSN	DSBA domain-containing protein. (129 aa)
	M2TCE0_COCSN	DSBA domain-containing protein. (219 aa)
	M2T1Q2_COCSN	Vps8 domain-containing protein. (1603 aa)
	M2SPL3_COCSN	DSBA domain-containing protein. (228 aa)
	M2SJD9_COCSN	Uncharacterized protein. (155 aa)
	M2RLY3_COCSN	Pep3_Vps18 domain-containing protein. (965 aa)
	M2SGU1_COCSN	E3 ubiquitin-protein ligase PEP5. (974 aa)
	M2SCC8_COCSN	Probable vacuolar protein sorting-associated protein 16 homolog; Essential for vacuolar protein sorting. Required for vacuole biogenesis, stability and to maintain vacuole morphology. (839 aa)
	M2RQM4_COCSN	Uncharacterized protein. (1334 aa)

Your Current Organism:

Bipolaris sorokiniana

NCBI taxonomy Id: 665912
Other names: B. sorokiniana ND90Pr, Bipolaris sorokiniana ND90Pr, Cochliobolus sativus ND90Pr

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M2RLY3_COCSN	M2RQM4_COCSN	M2RLY3	M2RQM4	Pep3_Vps18 domain-containing protein.	Uncharacterized protein.	0.996
M2RLY3_COCSN	M2SCC8_COCSN	M2RLY3	M2SCC8	Pep3_Vps18 domain-containing protein.	Probable vacuolar protein sorting-associated protein 16 homolog; Essential for vacuolar protein sorting. Required for vacuole biogenesis, stability and to maintain vacuole morphology.	0.923
M2RLY3_COCSN	M2SGU1_COCSN	M2RLY3	M2SGU1	Pep3_Vps18 domain-containing protein.	E3 ubiquitin-protein ligase PEP5.	0.997
M2RLY3_COCSN	M2SJD9_COCSN	M2RLY3	M2SJD9	Pep3_Vps18 domain-containing protein.	Uncharacterized protein.	0.923
M2RLY3_COCSN	M2T1Q2_COCSN	M2RLY3	M2T1Q2	Pep3_Vps18 domain-containing protein.	Vps8 domain-containing protein.	0.995
M2RLY3_COCSN	M2TJG9_COCSN	M2RLY3	M2TJG9	Pep3_Vps18 domain-containing protein.	CNH domain-containing protein.	0.996
M2RQM4_COCSN	M2RLY3_COCSN	M2RQM4	M2RLY3	Uncharacterized protein.	Pep3_Vps18 domain-containing protein.	0.996
M2RQM4_COCSN	M2SCC8_COCSN	M2RQM4	M2SCC8	Uncharacterized protein.	Probable vacuolar protein sorting-associated protein 16 homolog; Essential for vacuolar protein sorting. Required for vacuole biogenesis, stability and to maintain vacuole morphology.	0.911
M2RQM4_COCSN	M2SGU1_COCSN	M2RQM4	M2SGU1	Uncharacterized protein.	E3 ubiquitin-protein ligase PEP5.	0.996
M2RQM4_COCSN	M2SJD9_COCSN	M2RQM4	M2SJD9	Uncharacterized protein.	Uncharacterized protein.	0.911
M2RQM4_COCSN	M2T1Q2_COCSN	M2RQM4	M2T1Q2	Uncharacterized protein.	Vps8 domain-containing protein.	0.695
M2RQM4_COCSN	M2TJG9_COCSN	M2RQM4	M2TJG9	Uncharacterized protein.	CNH domain-containing protein.	0.996
M2SCC8_COCSN	M2RLY3_COCSN	M2SCC8	M2RLY3	Probable vacuolar protein sorting-associated protein 16 homolog; Essential for vacuolar protein sorting. Required for vacuole biogenesis, stability and to maintain vacuole morphology.	Pep3_Vps18 domain-containing protein.	0.923
M2SCC8_COCSN	M2RQM4_COCSN	M2SCC8	M2RQM4	Probable vacuolar protein sorting-associated protein 16 homolog; Essential for vacuolar protein sorting. Required for vacuole biogenesis, stability and to maintain vacuole morphology.	Uncharacterized protein.	0.911
M2SCC8_COCSN	M2SGU1_COCSN	M2SCC8	M2SGU1	Probable vacuolar protein sorting-associated protein 16 homolog; Essential for vacuolar protein sorting. Required for vacuole biogenesis, stability and to maintain vacuole morphology.	E3 ubiquitin-protein ligase PEP5.	0.911
M2SCC8_COCSN	M2T1Q2_COCSN	M2SCC8	M2T1Q2	Probable vacuolar protein sorting-associated protein 16 homolog; Essential for vacuolar protein sorting. Required for vacuole biogenesis, stability and to maintain vacuole morphology.	Vps8 domain-containing protein.	0.884
M2SCC8_COCSN	M2TJG9_COCSN	M2SCC8	M2TJG9	Probable vacuolar protein sorting-associated protein 16 homolog; Essential for vacuolar protein sorting. Required for vacuole biogenesis, stability and to maintain vacuole morphology.	CNH domain-containing protein.	0.931
M2SGU1_COCSN	M2RLY3_COCSN	M2SGU1	M2RLY3	E3 ubiquitin-protein ligase PEP5.	Pep3_Vps18 domain-containing protein.	0.997
M2SGU1_COCSN	M2RQM4_COCSN	M2SGU1	M2RQM4	E3 ubiquitin-protein ligase PEP5.	Uncharacterized protein.	0.996
M2SGU1_COCSN	M2SCC8_COCSN	M2SGU1	M2SCC8	E3 ubiquitin-protein ligase PEP5.	Probable vacuolar protein sorting-associated protein 16 homolog; Essential for vacuolar protein sorting. Required for vacuole biogenesis, stability and to maintain vacuole morphology.	0.911