STRINGSTRING
AGG88961.1 AGG88961.1 AGG88962.1 AGG88962.1 AGG89297.1 AGG89297.1 AGG88442.1 AGG88442.1 AGG88165.1 AGG88165.1 AGG90806.1 AGG90806.1 AGG90727.1 AGG90727.1 AGG90705.1 AGG90705.1 AGG88164.1 AGG88164.1 AGG90704.1 AGG90704.1 AGG87433.1 AGG87433.1 AGG87268.1 AGG87268.1 AGG90501.1 AGG90501.1 AGG90016.1 AGG90016.1 nirK nirK AGG89950.1 AGG89950.1 AGG89758.1 AGG89758.1 AGG89430.1 AGG89430.1 AGG89299.1 AGG89299.1 AGG88872.1 AGG88872.1 AGG88844.1 AGG88844.1 AGG88826.1 AGG88826.1 AGG88825.1 AGG88825.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AGG88961.1PFAM: Cytochrome c. (106 aa)
AGG88962.1PFAM: Cytochrome c. (117 aa)
AGG89297.1PFAM: Cytochrome C oxidase, mono-heme subunit/FixO; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II. (220 aa)
AGG88442.1Ketosteroid isomerase-like enzyme. (357 aa)
AGG88165.1Cytochrome c, mono- and diheme variants family; PFAM: Cytochrome c. (429 aa)
AGG90806.1PFAM: Cytochrome c. (173 aa)
AGG90727.1PFAM: Multicopper oxidase; Cytochrome c; TIGRFAM: nitrite reductase, copper-containing. (658 aa)
AGG90705.1PFAM: Cytochrome c. (232 aa)
AGG88164.1PFAM: Cytochrome c. (278 aa)
AGG90704.1Cytochrome c, mono- and diheme variants family; PFAM: Cytochrome c. (427 aa)
AGG87433.1PFAM: Cytochrome c. (260 aa)
AGG87268.1Cytochrome c, mono- and diheme variants family; PFAM: Cytochrome c. (463 aa)
AGG90501.1PFAM: Cytochrome c. (102 aa)
AGG90016.1PFAM: Cytochrome C1 family. (252 aa)
nirKDissimilatory nitrite reductase (NO-forming), copper type apoprotein; PFAM: Multicopper oxidase; Cytochrome c; TIGRFAM: nitrite reductase, copper-containing. (505 aa)
AGG89950.1PFAM: Cytochrome c. (321 aa)
AGG89758.1PFAM: Cytochrome c. (268 aa)
AGG89430.1PFAM: Cytochrome c; Di-haem cytochrome c peroxidase. (346 aa)
AGG89299.1Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex. (302 aa)
AGG88872.1High-affinity Fe2+/Pb2+ permease; PFAM: Cytochrome c; Iron permease FTR1 family; TIGRFAM: FTR1 family protein. (661 aa)
AGG88844.1Ketosteroid isomerase-like enzyme. (371 aa)
AGG88826.1Cytochrome c, mono- and diheme variants family; PFAM: Cytochrome c. (197 aa)
AGG88825.1PFAM: Cytochrome C oxidase, mono-heme subunit/FixO; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II. (210 aa)
Your Current Organism:
Rhodanobacter denitrificans
NCBI taxonomy Id: 666685
Other names: DSM 23569, JCM 17641, R. denitrificans, Rhodanobacter denitrificans Prakash et al. 2012, Rhodanobacter sp. 116-2, Rhodanobacter sp. 2APBS1, Rhodanobacter sp. FW104-R3, strain 2APBS1
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