(29 nodes) Lipid catabolic process network (Bacillus sp. 1NLA3E)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AGK52372.1	COG1960 Acyl-CoA dehydrogenases. (394 aa)
	AGK52582.1	COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II. (515 aa)
	AGK52965.1	PadR family transcriptional regulator; COG1752 Predicted esterase of the alpha-beta hydrolase superfamily. (263 aa)
	AGK52970.1	COG1024 Enoyl-CoA hydratase/carnithine racemase. (253 aa)
	AGK53267.1	COG1960 Acyl-CoA dehydrogenases. (378 aa)
	AGK53273.1	COG1960 Acyl-CoA dehydrogenases. (400 aa)
	AGK53300.1	COG1960 Acyl-CoA dehydrogenases. (406 aa)
	AGK53306.1	COG1960 Acyl-CoA dehydrogenases. (379 aa)
	AGK53311.1	COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family. (260 aa)
	AGK53499.1	Hypothetical protein; COG1960 Acyl-CoA dehydrogenases. (429 aa)
	AGK53500.1	COG1960 Acyl-CoA dehydrogenases. (402 aa)
	AGK53607.1	COG1960 Acyl-CoA dehydrogenases. (412 aa)
	AGK53934.1	COG1960 Acyl-CoA dehydrogenases. (404 aa)
	AGK53947.1	COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family. (265 aa)
	AGK54340.1	COG1960 Acyl-CoA dehydrogenases. (397 aa)
	AGK54365.1	Phospholipase; COG4667 Predicted esterase of the alpha-beta hydrolase superfamily. (294 aa)
	AGK54867.1	COG1752 Predicted esterase of the alpha-beta hydrolase superfamily. (294 aa)
	AGK55141.1	COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family. (257 aa)
	AGK55142.1	COG1309 Transcriptional regulator. (194 aa)
	AGK55257.1	FAD dependent oxidoreductase; COG2081 Predicted flavoproteins. (422 aa)
	AGK55506.1	COG1960 Acyl-CoA dehydrogenases. (594 aa)
	AGK55507.1	COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (391 aa)
	AGK55508.1	COG1250 3-hydroxyacyl-CoA dehydrogenase. (795 aa)
	AGK55839.1	COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (396 aa)
	AGK55903.1	COG1960 Acyl-CoA dehydrogenases. (351 aa)
	AGK55995.1	COG1960 Acyl-CoA dehydrogenases. (377 aa)
	AGK56068.1	COG1960 Acyl-CoA dehydrogenases. (379 aa)
	AGK56069.1	COG1960 Acyl-CoA dehydrogenases. (378 aa)
	AGK56071.1	COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (395 aa)

Your Current Organism:

Bacillus sp. 1NLA3E

NCBI taxonomy Id: 666686
Other names: B. sp. 1NLA3E

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGK52372.1	AGK52582.1	B1NLA3E_02960	B1NLA3E_04030	COG1960 Acyl-CoA dehydrogenases.	COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.	0.549
AGK52372.1	AGK53311.1	B1NLA3E_02960	B1NLA3E_07745	COG1960 Acyl-CoA dehydrogenases.	COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.758
AGK52372.1	AGK53947.1	B1NLA3E_02960	B1NLA3E_10965	COG1960 Acyl-CoA dehydrogenases.	COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.488
AGK52372.1	AGK55141.1	B1NLA3E_02960	B1NLA3E_16985	COG1960 Acyl-CoA dehydrogenases.	COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.752
AGK52372.1	AGK55507.1	B1NLA3E_02960	B1NLA3E_18815	COG1960 Acyl-CoA dehydrogenases.	COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	0.471
AGK52372.1	AGK55508.1	B1NLA3E_02960	B1NLA3E_18820	COG1960 Acyl-CoA dehydrogenases.	COG1250 3-hydroxyacyl-CoA dehydrogenase.	0.858
AGK52372.1	AGK55839.1	B1NLA3E_02960	B1NLA3E_20505	COG1960 Acyl-CoA dehydrogenases.	COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	0.471
AGK52372.1	AGK56071.1	B1NLA3E_02960	B1NLA3E_21665	COG1960 Acyl-CoA dehydrogenases.	COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	0.471
AGK52582.1	AGK52372.1	B1NLA3E_04030	B1NLA3E_02960	COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.	COG1960 Acyl-CoA dehydrogenases.	0.549
AGK52582.1	AGK53267.1	B1NLA3E_04030	B1NLA3E_07525	COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.	COG1960 Acyl-CoA dehydrogenases.	0.549
AGK52582.1	AGK53273.1	B1NLA3E_04030	B1NLA3E_07555	COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.	COG1960 Acyl-CoA dehydrogenases.	0.549
AGK52582.1	AGK53300.1	B1NLA3E_04030	B1NLA3E_07690	COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.	COG1960 Acyl-CoA dehydrogenases.	0.549
AGK52582.1	AGK53306.1	B1NLA3E_04030	B1NLA3E_07720	COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.	COG1960 Acyl-CoA dehydrogenases.	0.549
AGK52582.1	AGK53500.1	B1NLA3E_04030	B1NLA3E_08690	COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.	COG1960 Acyl-CoA dehydrogenases.	0.549
AGK52582.1	AGK53607.1	B1NLA3E_04030	B1NLA3E_09225	COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.	COG1960 Acyl-CoA dehydrogenases.	0.549
AGK52582.1	AGK54340.1	B1NLA3E_04030	B1NLA3E_12960	COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.	COG1960 Acyl-CoA dehydrogenases.	0.549
AGK52582.1	AGK55506.1	B1NLA3E_04030	B1NLA3E_18810	COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.	COG1960 Acyl-CoA dehydrogenases.	0.725
AGK52582.1	AGK55508.1	B1NLA3E_04030	B1NLA3E_18820	COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.	COG1250 3-hydroxyacyl-CoA dehydrogenase.	0.723
AGK52582.1	AGK55903.1	B1NLA3E_04030	B1NLA3E_20825	COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.	COG1960 Acyl-CoA dehydrogenases.	0.549
AGK52582.1	AGK56068.1	B1NLA3E_04030	B1NLA3E_21650	COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.	COG1960 Acyl-CoA dehydrogenases.	0.636