(15 nodes) Signal complex assembly network (Daphnia pulex)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	E9FQY8_DAPPU	Uncharacterized protein. (248 aa)
	E9FR01_DAPPU	Focal_AT domain-containing protein. (165 aa)
	E9FRW8_DAPPU	Focal_AT domain-containing protein. (107 aa)
	E9FS07_DAPPU	Focal_AT domain-containing protein. (130 aa)
	E9FS08_DAPPU	Focal_AT domain-containing protein. (212 aa)
	E9FUC1_DAPPU	Focal_AT domain-containing protein. (259 aa)
	E9G184_DAPPU	Uncharacterized protein. (128 aa)
	E9GAS9_DAPPU	Uncharacterized protein. (2762 aa)
	E9GI00_DAPPU	Uncharacterized protein. (218 aa)
	E9GI62_DAPPU	Uncharacterized protein. (256 aa)
	E9GNC6_DAPPU	Uncharacterized protein. (390 aa)
	E9H6E1_DAPPU	Focal_AT domain-containing protein. (56 aa)
	E9H7Z9_DAPPU	Focal_AT domain-containing protein. (211 aa)
	E9HED1_DAPPU	Focal_AT domain-containing protein. (124 aa)
	E9HYR1_DAPPU	Focal_AT domain-containing protein. (275 aa)

Your Current Organism:

Daphnia pulex

NCBI taxonomy Id: 6669
Other names: D. pulex, common water flea

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
E9FQY8_DAPPU	E9H6E1_DAPPU	E9FQY8	E9H6E1	Uncharacterized protein.	Focal_AT domain-containing protein.	0.422
E9FRW8_DAPPU	E9GI62_DAPPU	E9FRW8	E9GI62	Focal_AT domain-containing protein.	Uncharacterized protein.	0.489
E9FRW8_DAPPU	E9H6E1_DAPPU	E9FRW8	E9H6E1	Focal_AT domain-containing protein.	Focal_AT domain-containing protein.	0.414
E9FS07_DAPPU	E9H6E1_DAPPU	E9FS07	E9H6E1	Focal_AT domain-containing protein.	Focal_AT domain-containing protein.	0.476
E9FS07_DAPPU	E9HED1_DAPPU	E9FS07	E9HED1	Focal_AT domain-containing protein.	Focal_AT domain-containing protein.	0.436
E9FUC1_DAPPU	E9H6E1_DAPPU	E9FUC1	E9H6E1	Focal_AT domain-containing protein.	Focal_AT domain-containing protein.	0.419
E9GI62_DAPPU	E9FRW8_DAPPU	E9GI62	E9FRW8	Uncharacterized protein.	Focal_AT domain-containing protein.	0.489
E9H6E1_DAPPU	E9FQY8_DAPPU	E9H6E1	E9FQY8	Focal_AT domain-containing protein.	Uncharacterized protein.	0.422
E9H6E1_DAPPU	E9FRW8_DAPPU	E9H6E1	E9FRW8	Focal_AT domain-containing protein.	Focal_AT domain-containing protein.	0.414
E9H6E1_DAPPU	E9FS07_DAPPU	E9H6E1	E9FS07	Focal_AT domain-containing protein.	Focal_AT domain-containing protein.	0.476
E9H6E1_DAPPU	E9FUC1_DAPPU	E9H6E1	E9FUC1	Focal_AT domain-containing protein.	Focal_AT domain-containing protein.	0.419
E9H6E1_DAPPU	E9HYR1_DAPPU	E9H6E1	E9HYR1	Focal_AT domain-containing protein.	Focal_AT domain-containing protein.	0.419
E9HED1_DAPPU	E9FS07_DAPPU	E9HED1	E9FS07	Focal_AT domain-containing protein.	Focal_AT domain-containing protein.	0.436
E9HYR1_DAPPU	E9H6E1_DAPPU	E9HYR1	E9H6E1	Focal_AT domain-containing protein.	Focal_AT domain-containing protein.	0.419