(46 nodes) Formation of RNA Pol II elongation complex network (Daphnia pulex)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	E9FUT5_DAPPU	Uncharacterized protein. (607 aa)
	E9FW30_DAPPU	Uncharacterized protein. (1083 aa)
	EOG090X0BTZ	EOG090X0BTZ. (537 aa)
	E9FYU9_DAPPU	RPOL4c domain-containing protein. (137 aa)
	E9G1A5_DAPPU	RPOLD domain-containing protein. (274 aa)
	E9G2R9_DAPPU	Uncharacterized protein. (217 aa)
	E9G4Z9_DAPPU	RNA_pol_L_2 domain-containing protein. (117 aa)
	EOG090X02QS	EOG090X02QS. (584 aa)
	E9GFT0_DAPPU	Occludin_ELL domain-containing protein. (140 aa)
	E9GFT1_DAPPU	Uncharacterized protein. (244 aa)
	E9GGK1_DAPPU	Plus3 domain-containing protein. (722 aa)
	E9GIC1_DAPPU	TFIIS N-terminal domain-containing protein. (294 aa)
	EOG090X0J86	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (127 aa)
	E9GR89_DAPPU	Uncharacterized protein. (299 aa)
	E9H193_DAPPU	Uncharacterized protein. (542 aa)
	E9H195_DAPPU	CDC73_N domain-containing protein. (272 aa)
	E9H284_DAPPU	AHD domain-containing protein. (847 aa)
	E9H3F0_DAPPU	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (384 aa)
	E9H3N7_DAPPU	Uncharacterized protein. (1029 aa)
	E9H3P9_DAPPU	Uncharacterized protein. (825 aa)
	E9H3S4_DAPPU	YqgFc domain-containing protein. (519 aa)
	E9H3Y4_DAPPU	Uncharacterized protein. (59 aa)
	E9H3Z6_DAPPU	Uncharacterized protein. (627 aa)
	E9H710_DAPPU	Cyclin T-like protein; Belongs to the cyclin family. (315 aa)
	E9H753_DAPPU	Uncharacterized protein. (210 aa)
	E9H7T5_DAPPU	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (759 aa)
	E9H7V3_DAPPU	Uncharacterized protein. (172 aa)
	E9H8M1_DAPPU	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1703 aa)
	E9H8T2_DAPPU	Uncharacterized protein. (556 aa)
	EOG090X0NWO	Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family. (117 aa)
	E9HAD8_DAPPU	TFIIS N-terminal domain-containing protein. (458 aa)
	E9HCZ0_DAPPU	S1 motif domain-containing protein. (295 aa)
	E9HEE2_DAPPU	S1 motif domain-containing protein. (967 aa)
	E9HFR6_DAPPU	Cyclin-dependent protein kinase-like protein. (614 aa)
	E9HFR7_DAPPU	EAF domain-containing protein. (305 aa)
	E9HGL5_DAPPU	YqgF domain-containing protein. (132 aa)
	E9HI32_DAPPU	S1 motif domain-containing protein. (945 aa)
	E9HI77_DAPPU	Cyclin K-like protein; Belongs to the cyclin family. (385 aa)
	E9HI81_DAPPU	RRM domain-containing protein. (277 aa)
	E9HLY4_DAPPU	WD_REPEATS_REGION domain-containing protein. (305 aa)
	E9HMB3_DAPPU	Uncharacterized protein. (507 aa)
	E9HR94_DAPPU	Transcription elongation factor SPT5. (1099 aa)
	E9HUB2_DAPPU	TPR_REGION domain-containing protein. (1195 aa)
	E9HUC3_DAPPU	HDAg domain-containing protein. (539 aa)
	E9HUT7_DAPPU	Uncharacterized protein. (107 aa)
	E9HUU3_DAPPU	S1 motif domain-containing protein. (1215 aa)

Your Current Organism:

Daphnia pulex

NCBI taxonomy Id: 6669
Other names: D. pulex, common water flea

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
E9FUT5_DAPPU	E9FW30_DAPPU	E9FUT5	E9FW30	Uncharacterized protein.	Uncharacterized protein.	0.799
E9FUT5_DAPPU	E9FYU9_DAPPU	E9FUT5	E9FYU9	Uncharacterized protein.	RPOL4c domain-containing protein.	0.894
E9FUT5_DAPPU	E9G1A5_DAPPU	E9FUT5	E9G1A5	Uncharacterized protein.	RPOLD domain-containing protein.	0.951
E9FUT5_DAPPU	E9G4Z9_DAPPU	E9FUT5	E9G4Z9	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.898
E9FUT5_DAPPU	E9GFT0_DAPPU	E9FUT5	E9GFT0	Uncharacterized protein.	Occludin_ELL domain-containing protein.	0.838
E9FUT5_DAPPU	E9GFT1_DAPPU	E9FUT5	E9GFT1	Uncharacterized protein.	Uncharacterized protein.	0.838
E9FUT5_DAPPU	E9GGK1_DAPPU	E9FUT5	E9GGK1	Uncharacterized protein.	Plus3 domain-containing protein.	0.575
E9FUT5_DAPPU	E9GR89_DAPPU	E9FUT5	E9GR89	Uncharacterized protein.	Uncharacterized protein.	0.630
E9FUT5_DAPPU	E9H193_DAPPU	E9FUT5	E9H193	Uncharacterized protein.	Uncharacterized protein.	0.568
E9FUT5_DAPPU	E9H195_DAPPU	E9FUT5	E9H195	Uncharacterized protein.	CDC73_N domain-containing protein.	0.568
E9FUT5_DAPPU	E9H284_DAPPU	E9FUT5	E9H284	Uncharacterized protein.	AHD domain-containing protein.	0.827
E9FUT5_DAPPU	E9H3F0_DAPPU	E9FUT5	E9H3F0	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.746
E9FUT5_DAPPU	E9H3N7_DAPPU	E9FUT5	E9H3N7	Uncharacterized protein.	Uncharacterized protein.	0.554
E9FUT5_DAPPU	E9H3P9_DAPPU	E9FUT5	E9H3P9	Uncharacterized protein.	Uncharacterized protein.	0.554
E9FUT5_DAPPU	E9H3S4_DAPPU	E9FUT5	E9H3S4	Uncharacterized protein.	YqgFc domain-containing protein.	0.554
E9FUT5_DAPPU	E9H3Y4_DAPPU	E9FUT5	E9H3Y4	Uncharacterized protein.	Uncharacterized protein.	0.554
E9FUT5_DAPPU	E9H3Z6_DAPPU	E9FUT5	E9H3Z6	Uncharacterized protein.	Uncharacterized protein.	0.554
E9FUT5_DAPPU	E9H710_DAPPU	E9FUT5	E9H710	Uncharacterized protein.	Cyclin T-like protein; Belongs to the cyclin family.	0.868
E9FUT5_DAPPU	E9H753_DAPPU	E9FUT5	E9H753	Uncharacterized protein.	Uncharacterized protein.	0.831
E9FUT5_DAPPU	E9H7T5_DAPPU	E9FUT5	E9H7T5	Uncharacterized protein.	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	0.819