(6 nodes) Dendritic branch point network (Daphnia pulex)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	E9GPV8_DAPPU	Uncharacterized protein. (779 aa)
	E9GPW1_DAPPU	COR domain-containing protein. (528 aa)
	E9GPX3_DAPPU	Uncharacterized protein. (1563 aa)
	E9HDV7_DAPPU	Uncharacterized protein. (1861 aa)
	E9HDV8_DAPPU	Protein kinase domain-containing protein. (597 aa)
	E9I0X9_DAPPU	Uncharacterized protein. (2160 aa)

Your Current Organism:

Daphnia pulex

NCBI taxonomy Id: 6669
Other names: D. pulex, common water flea

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
E9GPV8_DAPPU	E9GPW1_DAPPU	E9GPV8	E9GPW1	Uncharacterized protein.	COR domain-containing protein.	0.996
E9GPV8_DAPPU	E9GPX3_DAPPU	E9GPV8	E9GPX3	Uncharacterized protein.	Uncharacterized protein.	0.995
E9GPV8_DAPPU	E9HDV7_DAPPU	E9GPV8	E9HDV7	Uncharacterized protein.	Uncharacterized protein.	0.995
E9GPV8_DAPPU	E9HDV8_DAPPU	E9GPV8	E9HDV8	Uncharacterized protein.	Protein kinase domain-containing protein.	0.999
E9GPV8_DAPPU	E9I0X9_DAPPU	E9GPV8	E9I0X9	Uncharacterized protein.	Uncharacterized protein.	0.995
E9GPW1_DAPPU	E9GPV8_DAPPU	E9GPW1	E9GPV8	COR domain-containing protein.	Uncharacterized protein.	0.996
E9GPW1_DAPPU	E9GPX3_DAPPU	E9GPW1	E9GPX3	COR domain-containing protein.	Uncharacterized protein.	0.995
E9GPW1_DAPPU	E9HDV7_DAPPU	E9GPW1	E9HDV7	COR domain-containing protein.	Uncharacterized protein.	0.995
E9GPW1_DAPPU	E9HDV8_DAPPU	E9GPW1	E9HDV8	COR domain-containing protein.	Protein kinase domain-containing protein.	0.997
E9GPW1_DAPPU	E9I0X9_DAPPU	E9GPW1	E9I0X9	COR domain-containing protein.	Uncharacterized protein.	0.995
E9GPX3_DAPPU	E9GPV8_DAPPU	E9GPX3	E9GPV8	Uncharacterized protein.	Uncharacterized protein.	0.995
E9GPX3_DAPPU	E9GPW1_DAPPU	E9GPX3	E9GPW1	Uncharacterized protein.	COR domain-containing protein.	0.995
E9GPX3_DAPPU	E9HDV7_DAPPU	E9GPX3	E9HDV7	Uncharacterized protein.	Uncharacterized protein.	0.995
E9GPX3_DAPPU	E9HDV8_DAPPU	E9GPX3	E9HDV8	Uncharacterized protein.	Protein kinase domain-containing protein.	0.995
E9GPX3_DAPPU	E9I0X9_DAPPU	E9GPX3	E9I0X9	Uncharacterized protein.	Uncharacterized protein.	0.995
E9HDV7_DAPPU	E9GPV8_DAPPU	E9HDV7	E9GPV8	Uncharacterized protein.	Uncharacterized protein.	0.995
E9HDV7_DAPPU	E9GPW1_DAPPU	E9HDV7	E9GPW1	Uncharacterized protein.	COR domain-containing protein.	0.995
E9HDV7_DAPPU	E9GPX3_DAPPU	E9HDV7	E9GPX3	Uncharacterized protein.	Uncharacterized protein.	0.995
E9HDV7_DAPPU	E9HDV8_DAPPU	E9HDV7	E9HDV8	Uncharacterized protein.	Protein kinase domain-containing protein.	0.999
E9HDV7_DAPPU	E9I0X9_DAPPU	E9HDV7	E9I0X9	Uncharacterized protein.	Uncharacterized protein.	0.995