(38 nodes) Cohesin Loading onto Chromatin, and Condensin complex network (Daphnia pulex)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	E9FT09_DAPPU	Structural maintenance of chromosomes protein. (1195 aa)
	E9FV02_DAPPU	Stromal antigen-like protein, copy A. (1166 aa)
	E9FV25_DAPPU	Putative stromalin antigen protein, SA-D. (974 aa)
	E9FV28_DAPPU	Putative stromalin antigen protein. (850 aa)
	E9FV59_DAPPU	Stromal antigen-like protein, variant 2. (870 aa)
	E9G047_DAPPU	Nipped-B protein. (2141 aa)
	E9G173_DAPPU	Cnd1 domain-containing protein. (1332 aa)
	E9G1Y8_DAPPU	REC8-like protein copy A. (790 aa)
	E9G2B8_DAPPU	Uncharacterized protein. (198 aa)
	E9G738_DAPPU	Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases. (1418 aa)
	E9G998_DAPPU	Uncharacterized protein. (227 aa)
	E9G9H0_DAPPU	SCD domain-containing protein. (64 aa)
	E9GFH4_DAPPU	Structural maintenance of chromosomes protein. (1217 aa)
	E9GH89_DAPPU	Uncharacterized protein. (50 aa)
	E9GJ33_DAPPU	Structural maintenance of chromosomes protein. (1247 aa)
	E9GRD8_DAPPU	Uncharacterized protein. (114 aa)
	E9GRW6_DAPPU	Uncharacterized protein. (620 aa)
	E9GU42_DAPPU	Condensin complex subunit 2; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. (721 aa)
	E9H166_DAPPU	Uncharacterized protein. (121 aa)
	E9H186_DAPPU	Uncharacterized protein. (615 aa)
	E9H1R5_DAPPU	Uncharacterized protein. (116 aa)
	E9H1S4_DAPPU	Uncharacterized protein. (1117 aa)
	E9H6Y6_DAPPU	Uncharacterized protein. (640 aa)
	E9H6Y9_DAPPU	Uncharacterized protein. (654 aa)
	E9H905_DAPPU	Uncharacterized protein. (469 aa)
	E9H912_DAPPU	SMC hinge domain-containing protein. (207 aa)
	E9HBJ9_DAPPU	WAPL domain-containing protein. (1126 aa)
	E9HF57_DAPPU	Uncharacterized protein. (37 aa)
	E9HJ28_DAPPU	Uncharacterized protein. (156 aa)
	E9HJ58_DAPPU	Structural maintenance of chromosomes protein. (1200 aa)
	Rad21	Putative RAD21. (757 aa)
	E9HM63_DAPPU	Uncharacterized protein. (73 aa)
	E9HM85_DAPPU	Cnd3 domain-containing protein. (886 aa)
	E9HNW2_DAPPU	Structural maintenance of chromosomes protein. (1313 aa)
	E9HPE3_DAPPU	SMC_N domain-containing protein. (95 aa)
	E9HTJ0_DAPPU	Uncharacterized protein. (407 aa)
	E9HY69_DAPPU	SMC_N domain-containing protein. (100 aa)
	E9I5P7_DAPPU	Uncharacterized protein. (72 aa)

Your Current Organism:

Daphnia pulex

NCBI taxonomy Id: 6669
Other names: D. pulex, common water flea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
E9FT09_DAPPU	E9FV02_DAPPU	E9FT09	E9FV02	Structural maintenance of chromosomes protein.	Stromal antigen-like protein, copy A.	0.489
E9FT09_DAPPU	E9FV25_DAPPU	E9FT09	E9FV25	Structural maintenance of chromosomes protein.	Putative stromalin antigen protein, SA-D.	0.489
E9FT09_DAPPU	E9FV28_DAPPU	E9FT09	E9FV28	Structural maintenance of chromosomes protein.	Putative stromalin antigen protein.	0.489
E9FT09_DAPPU	E9FV59_DAPPU	E9FT09	E9FV59	Structural maintenance of chromosomes protein.	Stromal antigen-like protein, variant 2.	0.489
E9FT09_DAPPU	E9G047_DAPPU	E9FT09	E9G047	Structural maintenance of chromosomes protein.	Nipped-B protein.	0.587
E9FT09_DAPPU	E9G173_DAPPU	E9FT09	E9G173	Structural maintenance of chromosomes protein.	Cnd1 domain-containing protein.	0.991
E9FT09_DAPPU	E9G1Y8_DAPPU	E9FT09	E9G1Y8	Structural maintenance of chromosomes protein.	REC8-like protein copy A.	0.522
E9FT09_DAPPU	E9G738_DAPPU	E9FT09	E9G738	Structural maintenance of chromosomes protein.	Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.	0.999
E9FT09_DAPPU	E9G998_DAPPU	E9FT09	E9G998	Structural maintenance of chromosomes protein.	Uncharacterized protein.	0.840
E9FT09_DAPPU	E9G9H0_DAPPU	E9FT09	E9G9H0	Structural maintenance of chromosomes protein.	SCD domain-containing protein.	0.489
E9FT09_DAPPU	E9GRW6_DAPPU	E9FT09	E9GRW6	Structural maintenance of chromosomes protein.	Uncharacterized protein.	0.995
E9FT09_DAPPU	E9GU42_DAPPU	E9FT09	E9GU42	Structural maintenance of chromosomes protein.	Condensin complex subunit 2; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes.	0.999
E9FT09_DAPPU	E9H186_DAPPU	E9FT09	E9H186	Structural maintenance of chromosomes protein.	Uncharacterized protein.	0.443
E9FT09_DAPPU	E9H1S4_DAPPU	E9FT09	E9H1S4	Structural maintenance of chromosomes protein.	Uncharacterized protein.	0.709
E9FT09_DAPPU	E9H6Y6_DAPPU	E9FT09	E9H6Y6	Structural maintenance of chromosomes protein.	Uncharacterized protein.	0.522
E9FT09_DAPPU	E9H6Y9_DAPPU	E9FT09	E9H6Y9	Structural maintenance of chromosomes protein.	Uncharacterized protein.	0.522
E9FT09_DAPPU	E9H905_DAPPU	E9FT09	E9H905	Structural maintenance of chromosomes protein.	Uncharacterized protein.	0.970
E9FT09_DAPPU	E9H912_DAPPU	E9FT09	E9H912	Structural maintenance of chromosomes protein.	SMC hinge domain-containing protein.	0.970
E9FT09_DAPPU	E9HBJ9_DAPPU	E9FT09	E9HBJ9	Structural maintenance of chromosomes protein.	WAPL domain-containing protein.	0.496
E9FT09_DAPPU	E9HF57_DAPPU	E9FT09	E9HF57	Structural maintenance of chromosomes protein.	Uncharacterized protein.	0.970