9 items (Daphnia pulex) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	E9I819_DAPPU	Adaptin_N domain-containing protein. (209 aa)
	E9I204_DAPPU	V-SNARE domain-containing protein. (174 aa)
	E9HUB4_DAPPU	Uncharacterized protein. (694 aa)
	E9H6T3_DAPPU	Clat_adaptor_s domain-containing protein. (189 aa)
	E9H0U3_DAPPU	Adaptin_N domain-containing protein. (1204 aa)
	E9GYI9_DAPPU	Uncharacterized protein. (911 aa)
	E9GPG8_DAPPU	ANK_REP_REGION domain-containing protein. (131 aa)
	E9FZR0_DAPPU	AP-1 complex subunit gamma. (861 aa)
	E9FQX9_DAPPU	t-SNARE coiled-coil homology domain-containing protein. (227 aa)

Your Current Organism:

Daphnia pulex

NCBI taxonomy Id: 6669
Other names: D. pulex, common water flea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
E9FQX9_DAPPU	E9GYI9_DAPPU	E9FQX9	E9GYI9	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.721
E9FQX9_DAPPU	E9HUB4_DAPPU	E9FQX9	E9HUB4	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.735
E9FQX9_DAPPU	E9I204_DAPPU	E9FQX9	E9I204	t-SNARE coiled-coil homology domain-containing protein.	V-SNARE domain-containing protein.	0.960
E9FZR0_DAPPU	E9H0U3_DAPPU	E9FZR0	E9H0U3	AP-1 complex subunit gamma.	Adaptin_N domain-containing protein.	0.639
E9FZR0_DAPPU	E9H6T3_DAPPU	E9FZR0	E9H6T3	AP-1 complex subunit gamma.	Clat_adaptor_s domain-containing protein.	0.952
E9FZR0_DAPPU	E9I819_DAPPU	E9FZR0	E9I819	AP-1 complex subunit gamma.	Adaptin_N domain-containing protein.	0.567
E9GYI9_DAPPU	E9FQX9_DAPPU	E9GYI9	E9FQX9	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.721
E9GYI9_DAPPU	E9HUB4_DAPPU	E9GYI9	E9HUB4	Uncharacterized protein.	Uncharacterized protein.	0.999
E9GYI9_DAPPU	E9I204_DAPPU	E9GYI9	E9I204	Uncharacterized protein.	V-SNARE domain-containing protein.	0.739
E9H0U3_DAPPU	E9FZR0_DAPPU	E9H0U3	E9FZR0	Adaptin_N domain-containing protein.	AP-1 complex subunit gamma.	0.639
E9H0U3_DAPPU	E9H6T3_DAPPU	E9H0U3	E9H6T3	Adaptin_N domain-containing protein.	Clat_adaptor_s domain-containing protein.	0.999
E9H0U3_DAPPU	E9I819_DAPPU	E9H0U3	E9I819	Adaptin_N domain-containing protein.	Adaptin_N domain-containing protein.	0.639
E9H6T3_DAPPU	E9FZR0_DAPPU	E9H6T3	E9FZR0	Clat_adaptor_s domain-containing protein.	AP-1 complex subunit gamma.	0.952
E9H6T3_DAPPU	E9H0U3_DAPPU	E9H6T3	E9H0U3	Clat_adaptor_s domain-containing protein.	Adaptin_N domain-containing protein.	0.999
E9H6T3_DAPPU	E9I819_DAPPU	E9H6T3	E9I819	Clat_adaptor_s domain-containing protein.	Adaptin_N domain-containing protein.	0.952
E9HUB4_DAPPU	E9FQX9_DAPPU	E9HUB4	E9FQX9	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.735
E9HUB4_DAPPU	E9GYI9_DAPPU	E9HUB4	E9GYI9	Uncharacterized protein.	Uncharacterized protein.	0.999
E9HUB4_DAPPU	E9I204_DAPPU	E9HUB4	E9I204	Uncharacterized protein.	V-SNARE domain-containing protein.	0.826
E9I204_DAPPU	E9FQX9_DAPPU	E9I204	E9FQX9	V-SNARE domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.960
E9I204_DAPPU	E9GYI9_DAPPU	E9I204	E9GYI9	V-SNARE domain-containing protein.	Uncharacterized protein.	0.739