(33 nodes) Axon midline choice point recognition network (Daphnia pulex)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	E9GKC7_DAPPU	Uncharacterized protein. (118 aa)
	E9I5I3_DAPPU	Uncharacterized protein. (371 aa)
	E9HWM7_DAPPU	Uncharacterized protein. (179 aa)
	E9HQ05_DAPPU	Uncharacterized protein. (3383 aa)
	E9HMP5_DAPPU	Spectrin beta chain; Belongs to the spectrin family. (2351 aa)
	E9HKL0_DAPPU	Uncharacterized protein. (598 aa)
	E9HH84_DAPPU	Uncharacterized protein. (163 aa)
	E9HCU3_DAPPU	Uncharacterized protein. (345 aa)
	E9HC20_DAPPU	Uncharacterized protein. (340 aa)
	E9HBT3_DAPPU	BTB domain-containing protein. (113 aa)
	FRU	Fruitless-like protein. (364 aa)
	E9H9N9_DAPPU	Uncharacterized protein. (382 aa)
	E9H784_DAPPU	Uncharacterized protein. (1378 aa)
	E9GS33_DAPPU	Uncharacterized protein. (467 aa)
	E9GS32_DAPPU	Uncharacterized protein. (286 aa)
	E9GRT9_DAPPU	W2 domain-containing protein. (418 aa)
	E9GMR4_DAPPU	BTB domain-containing protein. (405 aa)
	E9GML1_DAPPU	Uncharacterized protein. (1467 aa)
	E9GMK8_DAPPU	Uncharacterized protein. (572 aa)
	E9GMK5_DAPPU	Uncharacterized protein. (259 aa)
	E9GKW9_DAPPU	Uncharacterized protein. (773 aa)
	E9GCW3_DAPPU	BTB domain-containing protein. (123 aa)
	E9GCU9_DAPPU	SAC domain-containing protein. (588 aa)
	E9GB52_DAPPU	FABD domain-containing protein. (814 aa)
	E9GB51_DAPPU	Protein kinase domain-containing protein. (270 aa)
	E9GAK4_DAPPU	eIF2B_5 domain-containing protein. (103 aa)
	E9G7B3_DAPPU	BTB domain-containing protein. (119 aa)
	E9G5D8_DAPPU	Uncharacterized protein. (178 aa)
	E9G3D5_DAPPU	BTB domain-containing protein. (120 aa)
	E9G2Y1_DAPPU	Uncharacterized protein. (5227 aa)
	EOG090X0AVX	EOG090X0AVX. (305 aa)
	E9G1Z3_DAPPU	Uncharacterized protein. (464 aa)
	E9FW64_DAPPU	Uncharacterized protein. (2431 aa)

Your Current Organism:

Daphnia pulex

NCBI taxonomy Id: 6669
Other names: D. pulex, common water flea

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
E9FW64_DAPPU	E9G2Y1_DAPPU	E9FW64	E9G2Y1	Uncharacterized protein.	Uncharacterized protein.	0.433
E9FW64_DAPPU	E9G5D8_DAPPU	E9FW64	E9G5D8	Uncharacterized protein.	Uncharacterized protein.	0.433
E9FW64_DAPPU	E9GKC7_DAPPU	E9FW64	E9GKC7	Uncharacterized protein.	Uncharacterized protein.	0.433
E9FW64_DAPPU	E9H784_DAPPU	E9FW64	E9H784	Uncharacterized protein.	Uncharacterized protein.	0.470
E9FW64_DAPPU	E9HC20_DAPPU	E9FW64	E9HC20	Uncharacterized protein.	Uncharacterized protein.	0.482
E9FW64_DAPPU	E9HH84_DAPPU	E9FW64	E9HH84	Uncharacterized protein.	Uncharacterized protein.	0.433
E9FW64_DAPPU	E9HMP5_DAPPU	E9FW64	E9HMP5	Uncharacterized protein.	Spectrin beta chain; Belongs to the spectrin family.	0.830
E9FW64_DAPPU	E9HQ05_DAPPU	E9FW64	E9HQ05	Uncharacterized protein.	Uncharacterized protein.	0.433
E9FW64_DAPPU	E9I5I3_DAPPU	E9FW64	E9I5I3	Uncharacterized protein.	Uncharacterized protein.	0.433
E9G1Z3_DAPPU	E9G2Y1_DAPPU	E9G1Z3	E9G2Y1	Uncharacterized protein.	Uncharacterized protein.	0.433
E9G1Z3_DAPPU	E9G5D8_DAPPU	E9G1Z3	E9G5D8	Uncharacterized protein.	Uncharacterized protein.	0.433
E9G1Z3_DAPPU	E9GKC7_DAPPU	E9G1Z3	E9GKC7	Uncharacterized protein.	Uncharacterized protein.	0.433
E9G1Z3_DAPPU	E9H784_DAPPU	E9G1Z3	E9H784	Uncharacterized protein.	Uncharacterized protein.	0.470
E9G1Z3_DAPPU	E9HC20_DAPPU	E9G1Z3	E9HC20	Uncharacterized protein.	Uncharacterized protein.	0.433
E9G1Z3_DAPPU	E9HH84_DAPPU	E9G1Z3	E9HH84	Uncharacterized protein.	Uncharacterized protein.	0.433
E9G1Z3_DAPPU	E9HMP5_DAPPU	E9G1Z3	E9HMP5	Uncharacterized protein.	Spectrin beta chain; Belongs to the spectrin family.	0.830
E9G1Z3_DAPPU	E9HQ05_DAPPU	E9G1Z3	E9HQ05	Uncharacterized protein.	Uncharacterized protein.	0.433
E9G1Z3_DAPPU	E9I5I3_DAPPU	E9G1Z3	E9I5I3	Uncharacterized protein.	Uncharacterized protein.	0.433
E9G2Y1_DAPPU	E9FW64_DAPPU	E9G2Y1	E9FW64	Uncharacterized protein.	Uncharacterized protein.	0.433
E9G2Y1_DAPPU	E9G1Z3_DAPPU	E9G2Y1	E9G1Z3	Uncharacterized protein.	Uncharacterized protein.	0.433