(31 nodes) Regulation of embryonic cell shape network (Daphnia pulex)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Gna12	GNA12/13 guanine nucleotide binding protein, alpha 12/13. (365 aa)
	E9FT11_DAPPU	Uncharacterized protein. (1156 aa)
	E9FXU0_DAPPU	Uncharacterized protein. (676 aa)
	HOP	Hopscotch-like protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. (1082 aa)
	E9G1E9_DAPPU	ZP domain-containing protein. (69 aa)
	E9G1F2_DAPPU	Uncharacterized protein. (143 aa)
	E9G1Q7_DAPPU	ZP domain-containing protein. (585 aa)
	E9G9V3_DAPPU	Non-specific serine/threonine protein kinase; May play a role in the response to environmental stress. Appears to act upstream of the JUN N-terminal pathway. (1073 aa)
	E9GFH0_DAPPU	Uncharacterized protein. (201 aa)
	E9GG09_DAPPU	Uncharacterized protein. (499 aa)
	E9GG11_DAPPU	WH1 domain-containing protein. (161 aa)
	E9GG67_DAPPU	Uncharacterized protein. (413 aa)
	E9GI07_DAPPU	BTB domain-containing protein. (113 aa)
	E9GJA1_DAPPU	Uncharacterized protein. (215 aa)
	E9GNC7_DAPPU	Uncharacterized protein. (425 aa)
	E9GNC8_DAPPU	DH domain-containing protein. (353 aa)
	E9GND1_DAPPU	Uncharacterized protein. (845 aa)
	E9GT56_DAPPU	Uncharacterized protein. (1334 aa)
	E9GUK6_DAPPU	Uncharacterized protein. (105 aa)
	E9GWU5_DAPPU	Uncharacterized protein. (1168 aa)
	E9GXM8_DAPPU	Uncharacterized protein. (647 aa)
	E9H5L0_DAPPU	WH2 domain-containing protein. (100 aa)
	E9H5U5_DAPPU	Spaetzle domain-containing protein. (225 aa)
	E9H6N7_DAPPU	Tyrosine-protein kinase. (586 aa)
	E9H8T0_DAPPU	Uncharacterized protein; Belongs to the MAGUK family. (1585 aa)
	E9HCW1_DAPPU	Uncharacterized protein. (1520 aa)
	E9HFZ6_DAPPU	Uncharacterized protein. (592 aa)
	E9HHT7_DAPPU	Uncharacterized protein. (198 aa)
	E9HL06_DAPPU	Uncharacterized protein. (192 aa)
	E9HL86_DAPPU	Uncharacterized protein. (683 aa)
	E9HNI5_DAPPU	Uncharacterized protein. (185 aa)

Your Current Organism:

Daphnia pulex

NCBI taxonomy Id: 6669
Other names: D. pulex, common water flea

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
E9FT11_DAPPU	E9GUK6_DAPPU	E9FT11	E9GUK6	Uncharacterized protein.	Uncharacterized protein.	0.847
E9FT11_DAPPU	E9GWU5_DAPPU	E9FT11	E9GWU5	Uncharacterized protein.	Uncharacterized protein.	0.488
E9FT11_DAPPU	E9H8T0_DAPPU	E9FT11	E9H8T0	Uncharacterized protein.	Uncharacterized protein; Belongs to the MAGUK family.	0.650
E9FT11_DAPPU	E9HFZ6_DAPPU	E9FT11	E9HFZ6	Uncharacterized protein.	Uncharacterized protein.	0.847
E9FT11_DAPPU	E9HHT7_DAPPU	E9FT11	E9HHT7	Uncharacterized protein.	Uncharacterized protein.	0.847
E9FT11_DAPPU	E9HL06_DAPPU	E9FT11	E9HL06	Uncharacterized protein.	Uncharacterized protein.	0.847
E9G1E9_DAPPU	E9G1F2_DAPPU	E9G1E9	E9G1F2	ZP domain-containing protein.	Uncharacterized protein.	0.520
E9G1E9_DAPPU	E9GXM8_DAPPU	E9G1E9	E9GXM8	ZP domain-containing protein.	Uncharacterized protein.	0.531
E9G1E9_DAPPU	E9H5U5_DAPPU	E9G1E9	E9H5U5	ZP domain-containing protein.	Spaetzle domain-containing protein.	0.410
E9G1E9_DAPPU	E9HL86_DAPPU	E9G1E9	E9HL86	ZP domain-containing protein.	Uncharacterized protein.	0.541
E9G1F2_DAPPU	E9G1E9_DAPPU	E9G1F2	E9G1E9	Uncharacterized protein.	ZP domain-containing protein.	0.520
E9G1F2_DAPPU	E9GXM8_DAPPU	E9G1F2	E9GXM8	Uncharacterized protein.	Uncharacterized protein.	0.455
E9G1F2_DAPPU	E9H5U5_DAPPU	E9G1F2	E9H5U5	Uncharacterized protein.	Spaetzle domain-containing protein.	0.446
E9G1F2_DAPPU	E9HL86_DAPPU	E9G1F2	E9HL86	Uncharacterized protein.	Uncharacterized protein.	0.459
E9GNC7_DAPPU	E9GUK6_DAPPU	E9GNC7	E9GUK6	Uncharacterized protein.	Uncharacterized protein.	0.710
E9GNC7_DAPPU	E9HFZ6_DAPPU	E9GNC7	E9HFZ6	Uncharacterized protein.	Uncharacterized protein.	0.710
E9GNC7_DAPPU	E9HHT7_DAPPU	E9GNC7	E9HHT7	Uncharacterized protein.	Uncharacterized protein.	0.710
E9GNC7_DAPPU	E9HL06_DAPPU	E9GNC7	E9HL06	Uncharacterized protein.	Uncharacterized protein.	0.710
E9GNC7_DAPPU	Gna12	E9GNC7	E9FRB7	Uncharacterized protein.	GNA12/13 guanine nucleotide binding protein, alpha 12/13.	0.881
E9GNC7_DAPPU	HOP	E9GNC7	E9FY31	Uncharacterized protein.	Hopscotch-like protein; Belongs to the protein kinase superfamily. Tyr protein kinase family.	0.538