(58 nodes) SCF ubiquitin ligase complex network (Daphnia pulex)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	E9FXY3_DAPPU	F-box domain-containing protein. (541 aa)
	E9FWF3_DAPPU	Uncharacterized protein. (490 aa)
	E9FUP1_DAPPU	F-box domain-containing protein. (422 aa)
	E9FUN1_DAPPU	F-box domain-containing protein. (897 aa)
	E9FTF6_DAPPU	F-box domain-containing protein. (186 aa)
	E9FSP5_DAPPU	F-box domain-containing protein. (506 aa)
	E9FSM2_DAPPU	RING-type domain-containing protein. (109 aa)
	E9FS12_DAPPU	Uncharacterized protein. (324 aa)
	E9FQV6_DAPPU	F-box domain-containing protein. (334 aa)
	E9H7P9_DAPPU	F-box domain-containing protein. (584 aa)
	E9H7Y0_DAPPU	WD_REPEATS_REGION domain-containing protein. (493 aa)
	E9H8R0_DAPPU	JmjC domain-containing protein. (806 aa)
	E9HAS1_DAPPU	RING-type domain-containing protein. (109 aa)
	E9HCN4_DAPPU	F-box domain-containing protein. (243 aa)
	E9HCN8_DAPPU	F-box domain-containing protein. (290 aa)
	E9HLA2_DAPPU	Uncharacterized protein. (251 aa)
	E9HLB4_DAPPU	Uncharacterized protein. (519 aa)
	E9HLB5_DAPPU	Uncharacterized protein. (510 aa)
	E9HLC0_DAPPU	Uncharacterized protein. (513 aa)
	E9HMX2_DAPPU	Uncharacterized protein. (438 aa)
	E9HMX3_DAPPU	Uncharacterized protein. (510 aa)
	E9HND3_DAPPU	Uncharacterized protein. (432 aa)
	E9HP54_DAPPU	F-box domain-containing protein. (397 aa)
	E9HS82_DAPPU	RING-type domain-containing protein. (114 aa)
	E9HS84_DAPPU	RING-type domain-containing protein. (114 aa)
	E9HX25_DAPPU	F-box domain-containing protein. (311 aa)
	E9I0F5_DAPPU	Uncharacterized protein. (415 aa)
	E9I0K3_DAPPU	F-box domain-containing protein. (156 aa)
	E9I0K4_DAPPU	F-box domain-containing protein. (102 aa)
	E9I2W4_DAPPU	Uncharacterized protein. (319 aa)
	E9H6H4_DAPPU	Uncharacterized protein. (341 aa)
	E9I5Z2_DAPPU	Uncharacterized protein. (154 aa)
	E9H581_DAPPU	F-box domain-containing protein. (490 aa)
	E9H0Z1_DAPPU	F-box and WD40-domain protein. (262 aa)
	E9GZF4_DAPPU	F-box domain-containing protein. (226 aa)
	E9GXT5_DAPPU	Uncharacterized protein. (398 aa)
	E9GSE1_DAPPU	F-box domain-containing protein. (541 aa)
	E9GP07_DAPPU	F-box domain-containing protein. (181 aa)
	E9GNV0_DAPPU	Uncharacterized protein. (1022 aa)
	E9GNU9_DAPPU	F-box domain-containing protein. (411 aa)
	E9GNU2_DAPPU	F-box domain-containing protein. (532 aa)
	E9GLR9_DAPPU	WD_REPEATS_REGION domain-containing protein. (439 aa)
	E9GGQ2_DAPPU	CULLIN_2 domain-containing protein; Belongs to the cullin family. (777 aa)
	E9GDU7_DAPPU	F-box domain-containing protein. (487 aa)
	E9GB33_DAPPU	F-box domain-containing protein. (276 aa)
	E9G9B8_DAPPU	Uncharacterized protein. (493 aa)
	E9G8V4_DAPPU	F-box domain-containing protein. (320 aa)
	E9G8G9_DAPPU	TPR_REGION domain-containing protein. (426 aa)
	E9G6S8_DAPPU	F-box domain-containing protein. (53 aa)
	E9G608_DAPPU	F-box domain-containing protein. (607 aa)
	E9G585_DAPPU	Uncharacterized protein. (489 aa)
	E9G584_DAPPU	MYND-type domain-containing protein. (498 aa)
	E9G4I6_DAPPU	MYND-type domain-containing protein. (285 aa)
	E9G233_DAPPU	F-box domain-containing protein. (467 aa)
	E9G1Z9_DAPPU	F-box domain-containing protein. (431 aa)
	E9G1T9_DAPPU	Uncharacterized protein. (289 aa)
	E9G1I4_DAPPU	Uncharacterized protein. (511 aa)
	E9G0J8_DAPPU	Uncharacterized protein. (361 aa)

Your Current Organism:

Daphnia pulex

NCBI taxonomy Id: 6669
Other names: D. pulex, common water flea

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
E9FQV6_DAPPU	E9FSM2_DAPPU	E9FQV6	E9FSM2	F-box domain-containing protein.	RING-type domain-containing protein.	0.908
E9FQV6_DAPPU	E9FSP5_DAPPU	E9FQV6	E9FSP5	F-box domain-containing protein.	F-box domain-containing protein.	0.666
E9FQV6_DAPPU	E9FUP1_DAPPU	E9FQV6	E9FUP1	F-box domain-containing protein.	F-box domain-containing protein.	0.456
E9FQV6_DAPPU	E9G0J8_DAPPU	E9FQV6	E9G0J8	F-box domain-containing protein.	Uncharacterized protein.	0.650
E9FQV6_DAPPU	E9G1Z9_DAPPU	E9FQV6	E9G1Z9	F-box domain-containing protein.	F-box domain-containing protein.	0.469
E9FQV6_DAPPU	E9G233_DAPPU	E9FQV6	E9G233	F-box domain-containing protein.	F-box domain-containing protein.	0.501
E9FQV6_DAPPU	E9GB33_DAPPU	E9FQV6	E9GB33	F-box domain-containing protein.	F-box domain-containing protein.	0.562
E9FQV6_DAPPU	E9GGQ2_DAPPU	E9FQV6	E9GGQ2	F-box domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.998
E9FQV6_DAPPU	E9GZF4_DAPPU	E9FQV6	E9GZF4	F-box domain-containing protein.	F-box domain-containing protein.	0.456
E9FQV6_DAPPU	E9H8R0_DAPPU	E9FQV6	E9H8R0	F-box domain-containing protein.	JmjC domain-containing protein.	0.576
E9FQV6_DAPPU	E9HAS1_DAPPU	E9FQV6	E9HAS1	F-box domain-containing protein.	RING-type domain-containing protein.	0.908
E9FQV6_DAPPU	E9HLA2_DAPPU	E9FQV6	E9HLA2	F-box domain-containing protein.	Uncharacterized protein.	0.638
E9FQV6_DAPPU	E9HMX3_DAPPU	E9FQV6	E9HMX3	F-box domain-containing protein.	Uncharacterized protein.	0.916
E9FQV6_DAPPU	E9HP54_DAPPU	E9FQV6	E9HP54	F-box domain-containing protein.	F-box domain-containing protein.	0.583
E9FQV6_DAPPU	E9HS82_DAPPU	E9FQV6	E9HS82	F-box domain-containing protein.	RING-type domain-containing protein.	0.908
E9FQV6_DAPPU	E9HS84_DAPPU	E9FQV6	E9HS84	F-box domain-containing protein.	RING-type domain-containing protein.	0.908
E9FQV6_DAPPU	E9I5Z2_DAPPU	E9FQV6	E9I5Z2	F-box domain-containing protein.	Uncharacterized protein.	0.456
E9FS12_DAPPU	E9FSM2_DAPPU	E9FS12	E9FSM2	Uncharacterized protein.	RING-type domain-containing protein.	0.453
E9FS12_DAPPU	E9GGQ2_DAPPU	E9FS12	E9GGQ2	Uncharacterized protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.893
E9FS12_DAPPU	E9HAS1_DAPPU	E9FS12	E9HAS1	Uncharacterized protein.	RING-type domain-containing protein.	0.453