(45 nodes) EGF-type aspartate/asparagine hydroxylation site network (Daphnia pulex)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	E9HVM5_DAPPU	Uncharacterized protein. (660 aa)
	E9H6F1_DAPPU	Uncharacterized protein. (1788 aa)
	E9HBU7_DAPPU	Uncharacterized protein. (1830 aa)
	E9HD90_DAPPU	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (2952 aa)
	E9HEP9_DAPPU	Uncharacterized protein. (606 aa)
	E9HEQ0_DAPPU	Uncharacterized protein. (465 aa)
	E9HFS0_DAPPU	Uncharacterized protein. (5030 aa)
	E9HI96_DAPPU	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling. (561 aa)
	E9HQ28_DAPPU	Uncharacterized protein. (1422 aa)
	E9HQF5_DAPPU	Metalloendopeptidase. (909 aa)
	E9HR41_DAPPU	Uncharacterized protein. (1104 aa)
	E9HR60_DAPPU	Uncharacterized protein. (193 aa)
	E9HZ18_DAPPU	Uncharacterized protein. (739 aa)
	E9HWR7_DAPPU	Uncharacterized protein. (747 aa)
	E9HWM7_DAPPU	Uncharacterized protein. (179 aa)
	E9HR61_DAPPU	Uncharacterized protein. (3531 aa)
	E9FR27_DAPPU	Uncharacterized protein. (819 aa)
	E9FR30_DAPPU	Uncharacterized protein. (405 aa)
	E9FSN4_DAPPU	Uncharacterized protein. (440 aa)
	E9FT14_DAPPU	Uncharacterized protein. (1487 aa)
	E9FTX5_DAPPU	Uncharacterized protein. (6466 aa)
	E9I118_DAPPU	Uncharacterized protein. (281 aa)
	E9FUM2_DAPPU	Uncharacterized protein. (5035 aa)
	E9FY25_DAPPU	Uncharacterized protein. (197 aa)
	E9FZ21_DAPPU	EGF-like domain-containing protein. (409 aa)
	E9FZA9_DAPPU	Uncharacterized protein. (4507 aa)
	E9G1P9_DAPPU	Uncharacterized protein. (253 aa)
	E9G1W3_DAPPU	Cubilin. (3519 aa)
	E9G653_DAPPU	Uncharacterized protein. (744 aa)
	E9G6H0_DAPPU	Uncharacterized protein. (2888 aa)
	E9G6S4_DAPPU	Uncharacterized protein. (1373 aa)
	E9GAS9_DAPPU	Uncharacterized protein. (2762 aa)
	E9GB00_DAPPU	Uncharacterized protein. (2035 aa)
	E9GEU9_DAPPU	Uncharacterized protein. (1574 aa)
	E9GFT9_DAPPU	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling. (1186 aa)
	E9GG54_DAPPU	EGF-like domain-containing protein. (202 aa)
	E9GJV7_DAPPU	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family. (1625 aa)
	E9GMK5_DAPPU	Uncharacterized protein. (259 aa)
	E9GMK8_DAPPU	Uncharacterized protein. (572 aa)
	E9GML1_DAPPU	Uncharacterized protein. (1467 aa)
	E9GSD4_DAPPU	Uncharacterized protein. (3316 aa)
	E9GSY7_DAPPU	Notch 2. (3881 aa)
	E9GW26_DAPPU	Uncharacterized protein. (883 aa)
	E9GX43_DAPPU	Uncharacterized protein. (116 aa)
	E9H319_DAPPU	Uncharacterized protein. (4592 aa)

Your Current Organism:

Daphnia pulex

NCBI taxonomy Id: 6669
Other names: D. pulex, common water flea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
E9FR27_DAPPU	E9FZA9_DAPPU	E9FR27	E9FZA9	Uncharacterized protein.	Uncharacterized protein.	0.484
E9FR27_DAPPU	E9G6S4_DAPPU	E9FR27	E9G6S4	Uncharacterized protein.	Uncharacterized protein.	0.672
E9FR27_DAPPU	E9GW26_DAPPU	E9FR27	E9GW26	Uncharacterized protein.	Uncharacterized protein.	0.484
E9FR27_DAPPU	E9H319_DAPPU	E9FR27	E9H319	Uncharacterized protein.	Uncharacterized protein.	0.484
E9FR27_DAPPU	E9HBU7_DAPPU	E9FR27	E9HBU7	Uncharacterized protein.	Uncharacterized protein.	0.484
E9FR30_DAPPU	E9G6S4_DAPPU	E9FR30	E9G6S4	Uncharacterized protein.	Uncharacterized protein.	0.646
E9FR30_DAPPU	E9GSD4_DAPPU	E9FR30	E9GSD4	Uncharacterized protein.	Uncharacterized protein.	0.411
E9FR30_DAPPU	E9HWR7_DAPPU	E9FR30	E9HWR7	Uncharacterized protein.	Uncharacterized protein.	0.402
E9FR30_DAPPU	E9HZ18_DAPPU	E9FR30	E9HZ18	Uncharacterized protein.	Uncharacterized protein.	0.403
E9FZA9_DAPPU	E9FR27_DAPPU	E9FZA9	E9FR27	Uncharacterized protein.	Uncharacterized protein.	0.484
E9G6S4_DAPPU	E9FR27_DAPPU	E9G6S4	E9FR27	Uncharacterized protein.	Uncharacterized protein.	0.672
E9G6S4_DAPPU	E9FR30_DAPPU	E9G6S4	E9FR30	Uncharacterized protein.	Uncharacterized protein.	0.646
E9GFT9_DAPPU	E9HI96_DAPPU	E9GFT9	E9HI96	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling.	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling.	0.491
E9GJV7_DAPPU	E9HI96_DAPPU	E9GJV7	E9HI96	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling.	0.480
E9GSD4_DAPPU	E9FR30_DAPPU	E9GSD4	E9FR30	Uncharacterized protein.	Uncharacterized protein.	0.411
E9GW26_DAPPU	E9FR27_DAPPU	E9GW26	E9FR27	Uncharacterized protein.	Uncharacterized protein.	0.484
E9H319_DAPPU	E9FR27_DAPPU	E9H319	E9FR27	Uncharacterized protein.	Uncharacterized protein.	0.484
E9HBU7_DAPPU	E9FR27_DAPPU	E9HBU7	E9FR27	Uncharacterized protein.	Uncharacterized protein.	0.484
E9HEP9_DAPPU	E9HI96_DAPPU	E9HEP9	E9HI96	Uncharacterized protein.	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling.	0.506
E9HI96_DAPPU	E9GFT9_DAPPU	E9HI96	E9GFT9	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling.	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling.	0.491