(16 nodes) Small GTPase Rho network (Daphnia pulex)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	E9HL06_DAPPU	Uncharacterized protein. (192 aa)
	E9FRC3_DAPPU	Uncharacterized protein. (192 aa)
	E9G1W8_DAPPU	Uncharacterized protein. (202 aa)
	E9GIB4_DAPPU	Uncharacterized protein. (183 aa)
	E9GIB5_DAPPU	Uncharacterized protein. (184 aa)
	E9GIB6_DAPPU	Uncharacterized protein. (184 aa)
	E9GS47_DAPPU	Uncharacterized protein. (175 aa)
	E9GU61_DAPPU	BTB domain-containing protein. (727 aa)
	E9GUI3_DAPPU	Uncharacterized protein. (79 aa)
	E9H2U3_DAPPU	Uncharacterized protein. (195 aa)
	E9H688_DAPPU	Mitochondrial Rho GTPase; Mitochondrial GTPase involved in mitochondrial trafficking. Belongs to the mitochondrial Rho GTPase family. (627 aa)
	E9H6G6_DAPPU	Uncharacterized protein. (190 aa)
	E9HFZ6_DAPPU	Uncharacterized protein. (592 aa)
	E9GYE9_DAPPU	Uncharacterized protein. (191 aa)
	E9HHT7_DAPPU	Uncharacterized protein. (198 aa)
	E9GUK6_DAPPU	Uncharacterized protein. (105 aa)

Your Current Organism:

Daphnia pulex

NCBI taxonomy Id: 6669
Other names: D. pulex, common water flea

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
E9FRC3_DAPPU	E9GUK6_DAPPU	E9FRC3	E9GUK6	Uncharacterized protein.	Uncharacterized protein.	0.480
E9FRC3_DAPPU	E9HFZ6_DAPPU	E9FRC3	E9HFZ6	Uncharacterized protein.	Uncharacterized protein.	0.463
E9FRC3_DAPPU	E9HHT7_DAPPU	E9FRC3	E9HHT7	Uncharacterized protein.	Uncharacterized protein.	0.501
E9FRC3_DAPPU	E9HL06_DAPPU	E9FRC3	E9HL06	Uncharacterized protein.	Uncharacterized protein.	0.475
E9G1W8_DAPPU	E9GUK6_DAPPU	E9G1W8	E9GUK6	Uncharacterized protein.	Uncharacterized protein.	0.728
E9G1W8_DAPPU	E9HFZ6_DAPPU	E9G1W8	E9HFZ6	Uncharacterized protein.	Uncharacterized protein.	0.463
E9G1W8_DAPPU	E9HHT7_DAPPU	E9G1W8	E9HHT7	Uncharacterized protein.	Uncharacterized protein.	0.730
E9G1W8_DAPPU	E9HL06_DAPPU	E9G1W8	E9HL06	Uncharacterized protein.	Uncharacterized protein.	0.508
E9GIB5_DAPPU	E9GUK6_DAPPU	E9GIB5	E9GUK6	Uncharacterized protein.	Uncharacterized protein.	0.489
E9GIB5_DAPPU	E9HFZ6_DAPPU	E9GIB5	E9HFZ6	Uncharacterized protein.	Uncharacterized protein.	0.463
E9GIB5_DAPPU	E9HHT7_DAPPU	E9GIB5	E9HHT7	Uncharacterized protein.	Uncharacterized protein.	0.532
E9GIB5_DAPPU	E9HL06_DAPPU	E9GIB5	E9HL06	Uncharacterized protein.	Uncharacterized protein.	0.479
E9GIB6_DAPPU	E9GUK6_DAPPU	E9GIB6	E9GUK6	Uncharacterized protein.	Uncharacterized protein.	0.499
E9GIB6_DAPPU	E9HFZ6_DAPPU	E9GIB6	E9HFZ6	Uncharacterized protein.	Uncharacterized protein.	0.463
E9GIB6_DAPPU	E9HHT7_DAPPU	E9GIB6	E9HHT7	Uncharacterized protein.	Uncharacterized protein.	0.536
E9GIB6_DAPPU	E9HL06_DAPPU	E9GIB6	E9HL06	Uncharacterized protein.	Uncharacterized protein.	0.478
E9GS47_DAPPU	E9GUK6_DAPPU	E9GS47	E9GUK6	Uncharacterized protein.	Uncharacterized protein.	0.487
E9GS47_DAPPU	E9HFZ6_DAPPU	E9GS47	E9HFZ6	Uncharacterized protein.	Uncharacterized protein.	0.463
E9GS47_DAPPU	E9HHT7_DAPPU	E9GS47	E9HHT7	Uncharacterized protein.	Uncharacterized protein.	0.509
E9GS47_DAPPU	E9HL06_DAPPU	E9GS47	E9HL06	Uncharacterized protein.	Uncharacterized protein.	0.479