35 items (Daphnia pulex) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	E9HKI1_DAPPU	V-SNARE coiled-coil homology domain-containing protein. (132 aa)
	E9FR76_DAPPU	Uncharacterized protein. (404 aa)
	E9FR78_DAPPU	Arrestin_C domain-containing protein. (468 aa)
	E9FRH1_DAPPU	Uncharacterized protein; Belongs to the synaptobrevin family. (222 aa)
	E9FWB9_DAPPU	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (885 aa)
	E9FWJ0_DAPPU	Uncharacterized protein. (688 aa)
	E9FY51_DAPPU	Uncharacterized protein. (381 aa)
	E9FYZ8_DAPPU	Uncharacterized protein. (123 aa)
	E9FZ55_DAPPU	Arrestin_C domain-containing protein. (388 aa)
	E9FZR0_DAPPU	AP-1 complex subunit gamma. (861 aa)
	E9G235_DAPPU	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family. (422 aa)
	E9GHF3_DAPPU	Sulfatase domain-containing protein. (506 aa)
	EOG090X0856	EOG090X0856. (309 aa)
	E9GJF4_DAPPU	RAP domain-containing protein. (606 aa)
	E9GLP9_DAPPU	Uncharacterized protein. (349 aa)
	E9GRK2_DAPPU	Uncharacterized protein. (856 aa)
	E9GTP3_DAPPU	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1663 aa)
	E9GZ21_DAPPU	Arrestin_C domain-containing protein. (438 aa)
	E9H0L3_DAPPU	AP complex subunit beta. (930 aa)
	E9H226_DAPPU	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (179 aa)
	E9H3D5_DAPPU	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (182 aa)
	E9H4H5_DAPPU	Uncharacterized protein. (228 aa)
	E9H5J7_DAPPU	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family. (265 aa)
	E9H9G0_DAPPU	Arrestin_C domain-containing protein. (395 aa)
	E9HB23_DAPPU	Arrestin_C domain-containing protein. (417 aa)
	E9HDF7_DAPPU	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (179 aa)
	E9HDG0_DAPPU	Arrestin_C domain-containing protein. (392 aa)
	E9HF43_DAPPU	Uncharacterized protein. (1686 aa)
	krz2	Uncharacterized protein krz2. (419 aa)
	E9HMP3_DAPPU	Uncharacterized protein. (392 aa)
	E9HS18_DAPPU	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (157 aa)
	E9HVQ6_DAPPU	Uncharacterized protein. (627 aa)
	E9HXR5_DAPPU	B2-adapt-app_C domain-containing protein. (128 aa)
	E9I210_DAPPU	Adaptin_N domain-containing protein. (636 aa)
	E9I819_DAPPU	Adaptin_N domain-containing protein. (209 aa)

Your Current Organism:

Daphnia pulex

NCBI taxonomy Id: 6669
Other names: D. pulex, common water flea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
E9FR76_DAPPU	E9FWB9_DAPPU	E9FR76	E9FWB9	Uncharacterized protein.	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.580
E9FR76_DAPPU	E9FYZ8_DAPPU	E9FR76	E9FYZ8	Uncharacterized protein.	Uncharacterized protein.	0.671
E9FR76_DAPPU	E9FZR0_DAPPU	E9FR76	E9FZR0	Uncharacterized protein.	AP-1 complex subunit gamma.	0.585
E9FR76_DAPPU	E9GHF3_DAPPU	E9FR76	E9GHF3	Uncharacterized protein.	Sulfatase domain-containing protein.	0.556
E9FR76_DAPPU	E9GRK2_DAPPU	E9FR76	E9GRK2	Uncharacterized protein.	Uncharacterized protein.	0.556
E9FR76_DAPPU	E9I819_DAPPU	E9FR76	E9I819	Uncharacterized protein.	Adaptin_N domain-containing protein.	0.585
E9FR78_DAPPU	E9FWB9_DAPPU	E9FR78	E9FWB9	Arrestin_C domain-containing protein.	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.426
E9FR78_DAPPU	E9GTP3_DAPPU	E9FR78	E9GTP3	Arrestin_C domain-containing protein.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.718
E9FR78_DAPPU	E9H0L3_DAPPU	E9FR78	E9H0L3	Arrestin_C domain-containing protein.	AP complex subunit beta.	0.452
E9FR78_DAPPU	E9HKI1_DAPPU	E9FR78	E9HKI1	Arrestin_C domain-containing protein.	V-SNARE coiled-coil homology domain-containing protein.	0.476
E9FR78_DAPPU	E9HVQ6_DAPPU	E9FR78	E9HVQ6	Arrestin_C domain-containing protein.	Uncharacterized protein.	0.718
E9FR78_DAPPU	E9HXR5_DAPPU	E9FR78	E9HXR5	Arrestin_C domain-containing protein.	B2-adapt-app_C domain-containing protein.	0.452
E9FR78_DAPPU	E9I210_DAPPU	E9FR78	E9I210	Arrestin_C domain-containing protein.	Adaptin_N domain-containing protein.	0.452
E9FRH1_DAPPU	E9FWB9_DAPPU	E9FRH1	E9FWB9	Uncharacterized protein; Belongs to the synaptobrevin family.	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.584
E9FRH1_DAPPU	E9FWJ0_DAPPU	E9FRH1	E9FWJ0	Uncharacterized protein; Belongs to the synaptobrevin family.	Uncharacterized protein.	0.633
E9FRH1_DAPPU	E9FY51_DAPPU	E9FRH1	E9FY51	Uncharacterized protein; Belongs to the synaptobrevin family.	Uncharacterized protein.	0.559
E9FRH1_DAPPU	E9FYZ8_DAPPU	E9FRH1	E9FYZ8	Uncharacterized protein; Belongs to the synaptobrevin family.	Uncharacterized protein.	0.645
E9FRH1_DAPPU	E9FZR0_DAPPU	E9FRH1	E9FZR0	Uncharacterized protein; Belongs to the synaptobrevin family.	AP-1 complex subunit gamma.	0.665
E9FRH1_DAPPU	E9G235_DAPPU	E9FRH1	E9G235	Uncharacterized protein; Belongs to the synaptobrevin family.	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.641
E9FRH1_DAPPU	E9GJF4_DAPPU	E9FRH1	E9GJF4	Uncharacterized protein; Belongs to the synaptobrevin family.	RAP domain-containing protein.	0.556