STRINGSTRING
araD araD abfA abfA rhaAB rhaAB ABC0320 ABC0320 ABC0316 ABC0316 ABC0315 ABC0315 pelB pelB ABC3225 ABC3225 glpK glpK ABC1154 ABC1154 uxaA uxaA ABC1147 ABC1147 ABC1141 ABC1141 ABC1128 ABC1128 ABC1127 ABC1127 ABC1112 ABC1112 glpD glpD ABC1498 ABC1498 dra dra glcK glcK cah cah iolA2 iolA2 ABC1926 ABC1926 ABC2079 ABC2079 odhA odhA rpe rpe ABC4076 ABC4076 fbaA fbaA bglH bglH ABC3756 ABC3756 rbsK-3 rbsK-3 rbsK-2 rbsK-2 ABC3568 ABC3568 rbsK rbsK rbsD rbsD ABC3505 ABC3505 ABC3502 ABC3502 glpK-2 glpK-2 ABC3277 ABC3277 pdhC pdhC pdhB pdhB pdhA pdhA bkdB bkdB ABC2531 ABC2531 pykA pykA pfk pfk ABC2731 ABC2731 ldh ldh pgi pgi ABC2971 ABC2971 eno eno pgm pgm tpi tpi pgk pgk ABC3116 ABC3116 ABC3195 ABC3195 ABC1041 ABC1041 kduI kduI kduD kduD ABC0954 ABC0954 ABC0858 ABC0858 ABC0646 ABC0646 ABC0644 ABC0644 xylB xylB ABC0555 ABC0555 ABC0524 ABC0524 ABC0484 ABC0484 ABC0471 ABC0471 ABC0445 ABC0445 uxaB uxaB ABC0442 ABC0442 ABC0429 ABC0429 iolJ iolJ iolG iolG iolE iolE iolD iolD iolC iolC iolB iolB iolA iolA araA araA araB araB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
araDL-ribulose-5-phosphate 4-epimerase. (235 aa)
abfAalpha-L-arabinofuranosidase. (503 aa)
rhaABRhamnulokinase and L-rhamnose isomerase; In the N-terminal section; belongs to the rhamnulokinase family. (894 aa)
ABC0320Mannan endo-1,4-beta-mannosidase; Belongs to the glycosyl hydrolase 5 (cellulase A) family. (324 aa)
ABC0316Transcriptional regulator. (295 aa)
ABC0315Beta-glucosidase; Belongs to the glycosyl hydrolase 1 family. (462 aa)
pelBPectate lyase. (327 aa)
ABC3225Fructokinase. (297 aa)
glpKGlycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family. (500 aa)
ABC1154Altronate oxidoreductase. (493 aa)
uxaAAltronate hydrolase. (498 aa)
ABC1147Conserved hypothetical protein. (310 aa)
ABC1141Pectate lyase. (343 aa)
ABC1128Altronate hydrolase C-terminus. (388 aa)
ABC1127Altronate hydrolase N-terminus. (96 aa)
ABC1112Conserved hypothetical protein. (290 aa)
glpDGlycerol-3-phosphate dehydrogenase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family. (552 aa)
ABC1498Glycerol-3-phosphate dehydrogenase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family. (535 aa)
draDeoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily. (224 aa)
glcKGlucokinase. (326 aa)
cahcephalosporin-C deacetylase. (317 aa)
iolA2Methylmalonate-semialdehyde dehydrogenase; Catalyzes the oxidation of malonate semialdehyde (MSA) and methylmalonate semialdehyde (MMSA) into acetyl-CoA and propanoyl-CoA, respectively. (486 aa)
ABC1926Decarboxylating 6-phosphogluconate dehydrogenase; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. (469 aa)
ABC2079Conserved hypothetical protein; Probably catalyzes the deacetylation of acetylated carbohydrates an important step in the degradation of oligosaccharides. (248 aa)
odhA2-oxoglutarate dehydrogenase E1 component; E1 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the decarboxylation of 2-oxoglutarate, the first step in the conversion of 2-oxoglutarate to succinyl-CoA and CO(2). (943 aa)
rpeRibulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family. (215 aa)
ABC4076L-fuculose phosphate aldolase. (218 aa)
fbaAFructose-bisphosphate aldolase. (287 aa)
bglHBeta-glucosidase; Belongs to the glycosyl hydrolase 1 family. (477 aa)
ABC3756Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family. (583 aa)
rbsK-3Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway. (292 aa)
rbsK-2Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway. (291 aa)
ABC3568Fructose-bisphosphate aldolase. (289 aa)
rbsKRibokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway. (293 aa)
rbsDRibose ABC transporter auxiliary component; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose. (129 aa)
ABC3505Fructose-bisphosphate aldolase. (284 aa)
ABC35026-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis; Belongs to the phosphofructokinase type A (PFKA) family. (334 aa)
glpK-2Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family. (498 aa)
ABC3277Dehydrogenase. (363 aa)
pdhCPyruvate dehydrogenase E2 component. (425 aa)
pdhBPyruvate dehydrogenase E1 component beta subunit. (325 aa)
pdhAPyruvate dehydrogenase E1 component alpha subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3). (361 aa)
bkdBBranched-chain alpha-keto acid dehydrogenase E2 component. (418 aa)
ABC2531Conserved hypothetical protein. (75 aa)
pykAPyruvate kinase; Belongs to the pyruvate kinase family. (584 aa)
pfk6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis. (319 aa)
ABC2731Metal-dependent hydrolase; Belongs to the UPF0173 family. (228 aa)
ldhL-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family. (325 aa)
pgiGlucose-6-phosphate isomerase A. (451 aa)
ABC2971Hypothetical protein; Belongs to the glycosyl hydrolase 1 family. (79 aa)
enoEnolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. (429 aa)
pgm2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Essential for rapid growth and for sporulation. Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate. (510 aa)
tpiTriose-phosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family. (251 aa)
pgk3-phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family. (394 aa)
ABC3116Levanase; Belongs to the glycosyl hydrolase 32 family. (582 aa)
ABC3195Fructose-bisphosphate aldolase. (289 aa)
ABC10412-deoxy-D-gluconate 3-dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (252 aa)
kduI4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family. (276 aa)
kduD2-deoxy-D-gluconate 3-dehydrogenase. (250 aa)
ABC0954Conserved hypothetical protein. (129 aa)
ABC0858Fructose-bisphosphate aldolase. (289 aa)
ABC0646Chitinase; Belongs to the glycosyl hydrolase 18 family. (598 aa)
ABC0644Conserved hypothetical protein; Probably catalyzes the deacetylation of acetylated carbohydrates an important step in the degradation of oligosaccharides. (243 aa)
xylBXylose kinase. (499 aa)
ABC0555Alpha-glucuronidase; Belongs to the glycosyl hydrolase 67 family. (670 aa)
ABC0524Galactonate dehydratase. (382 aa)
ABC0484Beta-glucosidase; Belongs to the glycosyl hydrolase 1 family. (462 aa)
ABC04715-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family. (306 aa)
ABC0445Fructose-bisphosphate aldolase. (291 aa)
uxaBAltronate oxidoreductase. (509 aa)
ABC0442Altronate hydrolase. (497 aa)
ABC0429Myo-inositol 2-dehydrogenase. (340 aa)
iolJFructose-bisphosphate aldolase; Produces dihydroxyacetone phosphate (DHAP or glycerone phosphate) and malonic semialdehyde (MSA or 3-oxopropanoate) from 6- phospho-5-dehydro-2-deoxy-D-gluconate (DKGP); Belongs to the class II fructose-bisphosphate aldolase family. IolJ subfamily. (293 aa)
iolGMyo-inositol 2-dehydrogenase; Involved in the oxidation of myo-inositol (MI) and D-chiro- inositol (DCI) to 2-keto-myo-inositol (2KMI or 2-inosose) and 1-keto-D- chiro-inositol (1KDCI), respectively. (346 aa)
iolEMyo-inositol catabolism protein IolE; Catalyzes the dehydration of inosose (2-keto-myo-inositol, 2KMI or 2,4,6/3,5-pentahydroxycyclohexanone) to 3D-(3,5/4)- trihydroxycyclohexane-1,2-dione (D-2,3-diketo-4-deoxy-epi-inositol). (303 aa)
iolDMyo-inositol catabolism protein IolD; Involved in the cleavage of the C1-C2 bond of 3D-(3,5/4)- trihydroxycyclohexane-1,2-dione (THcHDO) to yield 5-deoxy-glucuronate (5DG). (637 aa)
iolCMyo-inositol catabolism protein IolC; Catalyzes the phosphorylation of 5-dehydro-2-deoxy-D- gluconate (2-deoxy-5-keto-D-gluconate or DKG) to 6-phospho-5-dehydro-2- deoxy-D-gluconate (DKGP). (326 aa)
iolBMyo-inositol catabolism protein IolB; Involved in the isomerization of 5-deoxy-glucuronate (5DG) to 5-dehydro-2-deoxy-D-gluconate (DKG or 2-deoxy-5-keto-D-gluconate). (271 aa)
iolAMethylmalonate-semialdehyde dehydrogenase; Catalyzes the oxidation of malonate semialdehyde (MSA) and methylmalonate semialdehyde (MMSA) into acetyl-CoA and propanoyl-CoA, respectively. (491 aa)
araAL-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose. (486 aa)
araBL-ribulokinase. (561 aa)
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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