STRINGSTRING
prs prs cysK cysK cysE cysE ABC0220 ABC0220 ABC0345 ABC0345 iolA iolA ABC0445 ABC0445 kdgK kdgK ABC0523 ABC0523 ABC0768 ABC0768 ABC0858 ABC0858 ABC0900 ABC0900 ABC0918 ABC0918 ABC0948 ABC0948 ABC1106 ABC1106 ABC1181 ABC1181 ABC1244 ABC1244 ABC1283 ABC1283 ABC1431 ABC1431 ABC1507 ABC1507 ABC1508 ABC1508 serC serC glcK glcK citG citG ABC1752 ABC1752 mmgD mmgD iolA2 iolA2 serA serA zwf zwf ABC1926 ABC1926 gntK gntK ilvA ilvA odhB odhB odhA odhA citB citB tkt tkt glcB glcB sucD sucD sucC sucC sdaAA sdaAA sdaAB sdaAB rpe rpe pycA pycA pdhD pdhD pdhC pdhC pdhB pdhB pdhA pdhA lpd lpd accC accC accB accB gcvPB gcvPB gcvPA gcvPA gcvT gcvT ABC2572 ABC2572 sdhB sdhB sdhA sdhA sdhC sdhC gapB gapB mdh mdh citC citC citZ citZ pykA pykA pfk pfk accA accA accD accD ABC2723 ABC2723 ackA ackA acsA acsA acoC acoC acoL acoL ABC2792 ABC2792 pckA pckA pgi pgi ABC2973 ABC2973 gcvH gcvH ABC2990 ABC2990 eno eno pgm pgm tpi tpi pgk pgk gapA gapA ABC3136 ABC3136 prs-2 prs-2 ABC3195 ABC3195 ABC3255 ABC3255 hxlA hxlA ABC3352 ABC3352 rpiA rpiA hxlB hxlB folD folD ABC3413 ABC3413 adhB adhB ABC3502 ABC3502 ABC3505 ABC3505 ABC3608 ABC3608 ABC3611 ABC3611 ABC3617 ABC3617 glyA glyA ABC3865 ABC3865 ABC3880 ABC3880 tal tal fbaA fbaA mmgB mmgB mmgA mmgA pta pta katX katX citA citA
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
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prsRibose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. (316 aa)
cysKCysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family. (312 aa)
cysESerine O-acetyltransferase. (221 aa)
ABC0220D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (316 aa)
ABC0345acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (394 aa)
iolAMethylmalonate-semialdehyde dehydrogenase; Catalyzes the oxidation of malonate semialdehyde (MSA) and methylmalonate semialdehyde (MMSA) into acetyl-CoA and propanoyl-CoA, respectively. (491 aa)
ABC0445Fructose-bisphosphate aldolase. (291 aa)
kdgK2-keto-3-deoxygluconate kinase. (315 aa)
ABC05232-dehydro-3-deoxyphosphogluconate aldolase. (210 aa)
ABC07683-carboxymuconate cyclase. (354 aa)
ABC0858Fructose-bisphosphate aldolase. (289 aa)
ABC0900Formate dehydrogenase alpha subunit. (985 aa)
ABC0918Malic enzyme. (389 aa)
ABC0948Transketolase; Belongs to the transketolase family. (666 aa)
ABC1106Transketolase; Belongs to the transketolase family. (668 aa)
ABC1181Threonine dehydratase. (322 aa)
ABC1244Conserved hypothetical protein. (125 aa)
ABC1283Catalase; Belongs to the catalase family. (488 aa)
ABC1431Phosphoglycerate mutase. (201 aa)
ABC1507Biotin carboxylase. (453 aa)
ABC1508Biotin carboxyl carrier protein. (70 aa)
serCPhosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine. (364 aa)
glcKGlucokinase. (326 aa)
citGFumarate hydratase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. (462 aa)
ABC1752Lactoylglutathione lyase. (137 aa)
mmgDCitrate synthase; Belongs to the citrate synthase family. (373 aa)
iolA2Methylmalonate-semialdehyde dehydrogenase; Catalyzes the oxidation of malonate semialdehyde (MSA) and methylmalonate semialdehyde (MMSA) into acetyl-CoA and propanoyl-CoA, respectively. (486 aa)
serAD-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (533 aa)
zwfGlucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone. (495 aa)
ABC1926Decarboxylating 6-phosphogluconate dehydrogenase; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. (469 aa)
gntKGluconokinase; Belongs to the FGGY kinase family. (516 aa)
ilvAThreonine dehydratase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. (414 aa)
odhB2-oxoglutarate dehydrogenase E2 component; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2). (420 aa)
odhA2-oxoglutarate dehydrogenase E1 component; E1 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the decarboxylation of 2-oxoglutarate, the first step in the conversion of 2-oxoglutarate to succinyl-CoA and CO(2). (943 aa)
citBAconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. (905 aa)
tktTransketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate. (665 aa)
glcBMalate synthase; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily. (727 aa)
sucDsuccinyl-CoA synthetase alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. (304 aa)
sucCsuccinyl-CoA synthetase beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. (386 aa)
sdaAAL-serine dehydratase alpha subunit; Belongs to the iron-sulfur dependent L-serine dehydratase family. (296 aa)
sdaABL-serine dehydratase beta subunit; Belongs to the iron-sulfur dependent L-serine dehydratase family. (220 aa)
rpeRibulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family. (215 aa)
pycAPyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. (1149 aa)
pdhDPyruvate dehydrogenase E3 component. (468 aa)
pdhCPyruvate dehydrogenase E2 component. (425 aa)
pdhBPyruvate dehydrogenase E1 component beta subunit. (325 aa)
pdhAPyruvate dehydrogenase E1 component alpha subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3). (361 aa)
lpdBranched-chain alpha-keto acid dehydrogenase E3 component. (473 aa)
accCacetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. (452 aa)
accBacetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. (162 aa)
gcvPBGlycine dehydrogenase [decarboxylating] subunit 2; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. C-terminal subunit subfamily. (491 aa)
gcvPAGlycine dehydrogenase [decarboxylating] subunit 1; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein. (448 aa)
gcvTAminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine. (367 aa)
ABC2572propionyl-CoA carboxylase beta chain. (499 aa)
sdhBSuccinate dehydrogenase iron-sulfur protein. (250 aa)
sdhASuccinate dehydrogenase flavoprotein subunit. (589 aa)
sdhCSuccinate dehydrogenase cytochrome b558 subunit. (202 aa)
gapBGlyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. (344 aa)
mdhMalate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family. (314 aa)
citCIsocitrate dehydrogenase [NADP]. (421 aa)
citZCitrate synthase II; Belongs to the citrate synthase family. (371 aa)
pykAPyruvate kinase; Belongs to the pyruvate kinase family. (584 aa)
pfk6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis. (319 aa)
accAAcetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA. (324 aa)
accDAcetyl-coenzyme A carboxylase carboxyl transferase subunit beta; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family. (280 aa)
ABC2723Malic enzyme. (410 aa)
ackAAcetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. (395 aa)
acsAAcetyl-coenzyme A synthetase. (569 aa)
acoCAcetoin dehydrogenase E2 component. (410 aa)
acoLAcetoin dehydrogenase E3 component. (399 aa)
ABC2792Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family. (310 aa)
pckAPhosphoenolpyruvate carboxykinase [ATP]; Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA. (527 aa)
pgiGlucose-6-phosphate isomerase A. (451 aa)
ABC2973Isocitrate lyase. (423 aa)
gcvHGlycine cleavage system H protein; Is also involved in protein lipoylation via its role as an octanoyl/lipoyl carrier protein intermediate; Belongs to the GcvH family. (146 aa)
ABC29903-hydroxyacyl-CoA dehydrogenase. (787 aa)
enoEnolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. (429 aa)
pgm2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Essential for rapid growth and for sporulation. Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate. (510 aa)
tpiTriose-phosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family. (251 aa)
pgk3-phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family. (394 aa)
gapAGlyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. (335 aa)
ABC31362-dehydro-3-deoxyphosphogluconate aldolase. (211 aa)
prs-2Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. (317 aa)
ABC3195Fructose-bisphosphate aldolase. (289 aa)
ABC3255Acetyl-coenzyme A synthetase. (522 aa)
hxlAHexulose-6-phosphate synthase. (208 aa)
ABC33522-keto-3-deoxygluconate kinase. (316 aa)
rpiARibose 5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. (228 aa)
hxlB6-phospho-3-hexuloisomerase. (183 aa)
folDBifunctional protein FolD; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. (279 aa)
ABC3413Glutathione-dependent formaldehyde dehydrogenase. (379 aa)
adhBGlutathione-dependent formaldehyde dehydrogenase. (377 aa)
ABC35026-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis; Belongs to the phosphofructokinase type A (PFKA) family. (334 aa)
ABC3505Fructose-bisphosphate aldolase. (284 aa)
ABC3608Fructose-1,6-bisphosphatase. (318 aa)
ABC3611Ribose 5-phosphate isomerase B. (153 aa)
ABC3617acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (378 aa)
glyASerine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. (417 aa)
ABC3865Ribose 5-phosphate isomerase B. (149 aa)
ABC3880Fructose-1,6-bisphosphatase. (321 aa)
talTransaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily. (216 aa)
fbaAFructose-bisphosphate aldolase. (287 aa)
mmgB3-hydroxybutyryl-CoA dehydrogenase. (283 aa)
mmgAacetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (394 aa)
ptaPhosphotransacetylase. (331 aa)
katXCatalase; Belongs to the catalase family. (540 aa)
citACitrate synthase I; Belongs to the citrate synthase family. (363 aa)
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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