STRINGSTRING
C7M84_016050 C7M84_016050 C7M84_015627 C7M84_015627 C7M84_012157 C7M84_012157 C7M84_011608 C7M84_011608 C7M84_014278 C7M84_014278 C7M84_009129 C7M84_009129 C7M84_003879 C7M84_003879 C7M84_016194 C7M84_016194 C7M84_021409 C7M84_021409 C7M84_008268 C7M84_008268 C7M84_019364 C7M84_019364 C7M84_003261 C7M84_003261 C7M84_002322 C7M84_002322 C7M84_000454 C7M84_000454 C7M84_008862 C7M84_008862 C7M84_000349 C7M84_000349 C7M84_007186 C7M84_007186 C7M84_009696 C7M84_009696 C7M84_009508 C7M84_009508 C7M84_006704 C7M84_006704 C7M84_006156 C7M84_006156 C7M84_005066 C7M84_005066 C7M84_004151 C7M84_004151 C7M84_025275 C7M84_025275 C7M84_023499 C7M84_023499 C7M84_021332 C7M84_021332 C7M84_003529 C7M84_003529 C7M84_006562 C7M84_006562
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
C7M84_016050Elongation factor Tu GTP-binding domain protein 2. (919 aa)
C7M84_015627Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (85 aa)
C7M84_012157Putative splicing factor 3B subunit 4. (431 aa)
C7M84_011608Putative N-alpha-acetyltransferase 38, NatC auxiliary subunit. (73 aa)
C7M84_014278Matrin-type domain-containing protein. (330 aa)
C7M84_009129Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (94 aa)
C7M84_003879U4/U6 small nuclear ribonucleoprotein Prp3. (665 aa)
C7M84_016194Putative RNA-binding protein 40-like. (481 aa)
C7M84_021409Putative ATP-dependent RNA helicase DDX23; Belongs to the DEAD box helicase family. (744 aa)
C7M84_008268Small nuclear ribonucleoprotein polypeptide G. (332 aa)
C7M84_019364Pre-mRNA-processing-splicing factor 8. (2305 aa)
C7M84_003261Small nuclear ribonucleoprotein Sm D3. (128 aa)
C7M84_002322Splicing factor 3B subunit 3. (573 aa)
C7M84_000454U4/U6 small nuclear ribonucleoprotein Prp31. (505 aa)
C7M84_008862Putative U5 small nuclear ribonucleoprotein 40 kDa protein. (157 aa)
C7M84_000349Putative ATP-dependent RNA helicase DDX46. (981 aa)
C7M84_007186Uncharacterized protein. (791 aa)
C7M84_009696WD_REPEATS_REGION domain-containing protein. (208 aa)
C7M84_009508U2 small nuclear ribonucleoprotein A. (247 aa)
C7M84_006704Pre-mRNA-processing factor 6. (933 aa)
C7M84_006156Putative splicing factor 3A subunit 1-like. (244 aa)
C7M84_005066Putative splicing factor 3B subunit 1 isoform X1. (1312 aa)
C7M84_004151Uncharacterized protein. (1090 aa)
C7M84_025275Splicing factor 3A subunit 2. (356 aa)
C7M84_023499U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (120 aa)
C7M84_021332Putative splicing factor 3B subunit 2 isoform X3. (739 aa)
C7M84_003529Putative U1 small nuclear ribonucleoprotein A. (253 aa)
C7M84_006562Small nuclear ribonucleoprotein G. (77 aa)
Your Current Organism:
Penaeus vannamei
NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp
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