(68 nodes) RNA Polymerase II Transcription Termination, and RNA recognition motif network (Penaeus vannamei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C7M84_020322	Myelinprotein expression factor. (226 aa)
	C7M84_017849	Transformer-2 protein. (229 aa)
	C7M84_015296	Putative phosphorylated adapter RNA export protein. (356 aa)
	C7M84_010574	DEAD(Asp-Glu-Ala-Asp) box polypeptide 39. (269 aa)
	C7M84_015527	Putative RNA-binding protein 1-like isoform X4. (132 aa)
	C7M84_009697	Uncharacterized protein. (323 aa)
	C7M84_009526	Putative THO complex subunit 2. (786 aa)
	C7M84_007294	Putative nucleolysin TIA-1 isoform p40-like. (442 aa)
	C7M84_008884	Uncharacterized protein. (637 aa)
	C7M84_023925	RRM domain-containing protein. (395 aa)
	C7M84_022467	THO complex subunit 1. (654 aa)
	C7M84_015181	Putative splicing factor, arginine/serine-rich 7. (310 aa)
	C7M84_023890	C3H1-type domain-containing protein. (728 aa)
	C7M84_009527	THO complex subunit 2. (357 aa)
	C7M84_016729	Putative polypyrimidine tract-binding protein 1 isoform X1. (710 aa)
	C7M84_009481	Chitin-binding type-2 domain-containing protein. (145 aa)
	C7M84_008328	C2H2-type domain-containing protein. (133 aa)
	C7M84_004511	Putative SRSF protein kinase 3 isoform X3. (395 aa)
	C7M84_019204	Putative U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2. (461 aa)
	C7M84_003878	Splicing factor 1. (561 aa)
	C7M84_016727	Uncharacterized protein. (517 aa)
	C7M84_021693	Putative RNA-binding protein 47 isoform X6. (242 aa)
	C7M84_025132	Putative serine/arginine-rich splicing factor 7-like. (356 aa)
	C7M84_014973	Transformer-2c. (255 aa)
	C7M84_015563	Putative RNA-binding protein cabeza-like. (456 aa)
	C7M84_017091	Serine/arginine-rich splicing factor 2. (108 aa)
	C7M84_017022	Heterogeneous nuclear ribonucleoprotein L. (334 aa)
	C7M84_009816	Putative Heterogeneous nuclear ribonucleoprotein A1. (191 aa)
	C7M84_006498	Putative THO complex subunit 4. (268 aa)
	C7M84_021694	Putative RNA-binding protein 47 isoform X5. (258 aa)
	C7M84_000883	Nuclear cap-binding protein subunit 1. (861 aa)
	C7M84_000177	Putative poly(RC)-binding protein 3 isoform X1. (590 aa)
	C7M84_015529	RNA-binding protein 1. (160 aa)
	C7M84_014972	Transformer-2c. (196 aa)
	C7M84_008759	WD_REPEATS_REGION domain-containing protein. (349 aa)
	C7M84_021965	Putative serine/arginine-rich splicing factor 4 isoform X19. (324 aa)
	C7M84_020317	Putative heterogeneous nuclear ribonucleoprotein M-like isoform X1. (175 aa)
	C7M84_014819	Putative E1b-55kD-associated protein. (978 aa)
	C7M84_008603	Uncharacterized protein. (352 aa)
	C7M84_021484	Putative RNA-binding protein 39 isoform X7. (523 aa)
	C7M84_020315	BED-type domain-containing protein. (511 aa)
	C7M84_018274	THO complex subunit 5-like protein. (667 aa)
	C7M84_018359	Transportin-3. (941 aa)
	C7M84_017092	RRM domain-containing protein. (128 aa)
	C7M84_016913	RRM domain-containing protein. (187 aa)
	C7M84_016480	Putative heterogeneous nuclear ribonucleoprotein H2 isoform X2. (407 aa)
	C7M84_014956	Putative heterogeneous nuclear ribonucleoprotein A1, A2/B1-like. (319 aa)
	C7M84_014787	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (334 aa)
	C7M84_014196	Putative splicing factor U2af 38 kDa subunit. (239 aa)
	C7M84_011207	Putative THO complex subunit 7-like. (219 aa)
	C7M84_010888	Putative phosphorylated adapter RNA export protein. (352 aa)
	C7M84_010738	Putative THO complex subunit 6-like. (372 aa)
	C7M84_010816	Putative splicing factor U2af 38 kDa subunit isoform X2. (179 aa)
	C7M84_009698	RRM domain-containing protein. (564 aa)
	C7M84_009528	THO complex subunit 2. (588 aa)
	C7M84_009482	Mossy fiber terminal-associated vertebrate-specific presynaptic protein. (371 aa)
	C7M84_007670	DEAD(Asp-Glu-Ala-Asp) box polypeptide 39. (497 aa)
	C7M84_007403	RRM domain-containing protein. (462 aa)
	C7M84_005827	Cold shock protein domain protein. (128 aa)
	C7M84_004355	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. Also involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. In the CBC complex, Cbp20 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requ [...] (180 aa)
	C7M84_003419	Putative mucin-17-like isoform X1. (965 aa)
	C7M84_002769	RNA-binding protein cabeza. (281 aa)
	C7M84_001694	RRM domain-containing protein. (504 aa)
	C7M84_000297	TAR DNA-binding protein 43. (434 aa)
	C7M84_025451	Putative SAP domain-containing ribonucleoprotein. (291 aa)
	C7M84_023106	Uncharacterized protein. (310 aa)
	C7M84_022254	Arsenite-resistance protein 2-like protein. (782 aa)
	C7M84_024694	Splicing factor. (144 aa)

Your Current Organism:

Penaeus vannamei

NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C7M84_000177	C7M84_000297	A0A3R7PYJ5	A0A423TX11	Putative poly(RC)-binding protein 3 isoform X1.	TAR DNA-binding protein 43.	0.503
C7M84_000177	C7M84_000883	A0A3R7PYJ5	A0A3R7PXP8	Putative poly(RC)-binding protein 3 isoform X1.	Nuclear cap-binding protein subunit 1.	0.791
C7M84_000177	C7M84_002769	A0A3R7PYJ5	A0A423TPX9	Putative poly(RC)-binding protein 3 isoform X1.	RNA-binding protein cabeza.	0.546
C7M84_000177	C7M84_003419	A0A3R7PYJ5	A0A423TN62	Putative poly(RC)-binding protein 3 isoform X1.	Putative mucin-17-like isoform X1.	0.523
C7M84_000177	C7M84_004355	A0A3R7PYJ5	A0A423TKN9	Putative poly(RC)-binding protein 3 isoform X1.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. Also involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. In the CBC complex, Cbp20 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requ [...]	0.828
C7M84_000177	C7M84_005827	A0A3R7PYJ5	A0A423TGR5	Putative poly(RC)-binding protein 3 isoform X1.	Cold shock protein domain protein.	0.623
C7M84_000177	C7M84_007294	A0A3R7PYJ5	A0A3R7M7K7	Putative poly(RC)-binding protein 3 isoform X1.	Putative nucleolysin TIA-1 isoform p40-like.	0.404
C7M84_000177	C7M84_007403	A0A3R7PYJ5	A0A423TCF7	Putative poly(RC)-binding protein 3 isoform X1.	RRM domain-containing protein.	0.696
C7M84_000177	C7M84_008328	A0A3R7PYJ5	A0A3R7P220	Putative poly(RC)-binding protein 3 isoform X1.	C2H2-type domain-containing protein.	0.430
C7M84_000177	C7M84_008603	A0A3R7PYJ5	A0A3R7SSF9	Putative poly(RC)-binding protein 3 isoform X1.	Uncharacterized protein.	0.470
C7M84_000177	C7M84_009482	A0A3R7PYJ5	A0A423T713	Putative poly(RC)-binding protein 3 isoform X1.	Mossy fiber terminal-associated vertebrate-specific presynaptic protein.	0.474
C7M84_000177	C7M84_009698	A0A3R7PYJ5	A0A423T604	Putative poly(RC)-binding protein 3 isoform X1.	RRM domain-containing protein.	0.547
C7M84_000177	C7M84_009816	A0A3R7PYJ5	A0A3R7PHF6	Putative poly(RC)-binding protein 3 isoform X1.	Putative Heterogeneous nuclear ribonucleoprotein A1.	0.503
C7M84_000177	C7M84_014819	A0A3R7PYJ5	A0A3R7SMF4	Putative poly(RC)-binding protein 3 isoform X1.	Putative E1b-55kD-associated protein.	0.607
C7M84_000177	C7M84_014956	A0A3R7PYJ5	A0A423SS06	Putative poly(RC)-binding protein 3 isoform X1.	Putative heterogeneous nuclear ribonucleoprotein A1, A2/B1-like.	0.576
C7M84_000177	C7M84_014972	A0A3R7PYJ5	A0A3R7QGW1	Putative poly(RC)-binding protein 3 isoform X1.	Transformer-2c.	0.623
C7M84_000177	C7M84_014973	A0A3R7PYJ5	A0A3R7PCX4	Putative poly(RC)-binding protein 3 isoform X1.	Transformer-2c.	0.623
C7M84_000177	C7M84_015181	A0A3R7PYJ5	A0A3R7MPF9	Putative poly(RC)-binding protein 3 isoform X1.	Putative splicing factor, arginine/serine-rich 7.	0.585
C7M84_000177	C7M84_015527	A0A3R7PYJ5	A0A3R7M3S4	Putative poly(RC)-binding protein 3 isoform X1.	Putative RNA-binding protein 1-like isoform X4.	0.696
C7M84_000177	C7M84_015529	A0A3R7PYJ5	A0A3R7Q212	Putative poly(RC)-binding protein 3 isoform X1.	RNA-binding protein 1.	0.508

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