STRINGSTRING
C7M84_003148 C7M84_003148 C7M84_016050 C7M84_016050 C7M84_015813 C7M84_015813 C7M84_024869 C7M84_024869 C7M84_023873 C7M84_023873 C7M84_019364 C7M84_019364 C7M84_015825 C7M84_015825 C7M84_004070 C7M84_004070 C7M84_017769 C7M84_017769 C7M84_017022 C7M84_017022 LSM4 LSM4 C7M84_002322 C7M84_002322 C7M84_001627 C7M84_001627 C7M84_004646 C7M84_004646 C7M84_020510 C7M84_020510 C7M84_023510 C7M84_023510 C7M84_009508 C7M84_009508 C7M84_023499 C7M84_023499 C7M84_022686 C7M84_022686 C7M84_003529 C7M84_003529
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
C7M84_003148Putative RNA methyltransferase bin3. (704 aa)
C7M84_016050Elongation factor Tu GTP-binding domain protein 2. (919 aa)
C7M84_015813Importin-7. (890 aa)
C7M84_024869IBB domain-containing protein. (415 aa)
C7M84_023873Sm domain-containing protein. (273 aa)
C7M84_019364Pre-mRNA-processing-splicing factor 8. (2305 aa)
C7M84_015825U1 small nuclear ribonucleoprotein C; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA; Belongs to the U1 small nuclear ribonucleoprotein C family. (192 aa)
C7M84_004070Pre-mRNA-splicing factor RBM22. (451 aa)
C7M84_017769Putative U4/U6 small nuclear ribonucleoprotein Prp4. (508 aa)
C7M84_017022Heterogeneous nuclear ribonucleoprotein L. (334 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (83 aa)
C7M84_002322Splicing factor 3B subunit 3. (573 aa)
C7M84_001627U1 small nuclear ribonucleoprotein 70 kDa-like. (297 aa)
C7M84_004646Putative U11/U12 small nuclear ribonucleoprotein 35 kDa protein. (247 aa)
C7M84_020510Protein HEXIM. (303 aa)
C7M84_023510Importin-7. (683 aa)
C7M84_009508U2 small nuclear ribonucleoprotein A. (247 aa)
C7M84_023499U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (120 aa)
C7M84_022686U1 small nuclear ribonucleoprotein. (170 aa)
C7M84_003529Putative U1 small nuclear ribonucleoprotein A. (253 aa)
Your Current Organism:
Penaeus vannamei
NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp
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