(15 nodes) Sm domain network (Penaeus vannamei)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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Your Input:
	C7M84_009129	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (94 aa)
	C7M84_005497	Putative translational activator of cytochrome c oxidase 1. (343 aa)
	C7M84_011608	Putative N-alpha-acetyltransferase 38, NatC auxiliary subunit. (73 aa)
	C7M84_006562	Small nuclear ribonucleoprotein G. (77 aa)
	C7M84_022707	Putative U6 snRNA-associated Sm-like protein LSm7. (140 aa)
	C7M84_001605	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (95 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (104 aa)
	C7M84_005998	Sm domain-containing protein. (373 aa)
	LSM5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (88 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (83 aa)
	C7M84_015052	AD domain-containing protein. (201 aa)
	C7M84_003261	Small nuclear ribonucleoprotein Sm D3. (128 aa)
	C7M84_004635	LSM14 domain-containing protein. (255 aa)
	C7M84_008268	Small nuclear ribonucleoprotein polypeptide G. (332 aa)
	C7M84_023873	Sm domain-containing protein. (273 aa)

Your Current Organism:

Penaeus vannamei

NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C7M84_001605	C7M84_003261	A0A423TT89	A0A3R7P7Z1	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein Sm D3.	0.969
C7M84_001605	C7M84_004635	A0A423TT89	A0A3R7N438	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	LSM14 domain-containing protein.	0.493
C7M84_001605	C7M84_006562	A0A423TT89	K4K5Y2	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein G.	0.946
C7M84_001605	C7M84_008268	A0A423TT89	A0A3R7MZE3	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein polypeptide G.	0.946
C7M84_001605	C7M84_009129	A0A423TT89	A0A3R7MBV4	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.974
C7M84_001605	C7M84_011608	A0A423TT89	A0A3R7M2N9	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Putative N-alpha-acetyltransferase 38, NatC auxiliary subunit.	0.960
C7M84_001605	C7M84_015052	A0A423TT89	A0A3R7PHP8	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	AD domain-containing protein.	0.613
C7M84_001605	C7M84_022707	A0A423TT89	A0A423U5Z7	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Putative U6 snRNA-associated Sm-like protein LSm7.	0.999
C7M84_001605	C7M84_023873	A0A423TT89	A0A3R7MQ49	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Sm domain-containing protein.	0.437
C7M84_001605	LSM3	A0A423TT89	A0A423TLE3	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.998
C7M84_001605	LSM4	A0A423TT89	A0A3R7PP21	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
C7M84_001605	LSM5	A0A423TT89	A0A423T7Q3	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.999
C7M84_003261	C7M84_001605	A0A3R7P7Z1	A0A423TT89	Small nuclear ribonucleoprotein Sm D3.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.969
C7M84_003261	C7M84_005998	A0A3R7P7Z1	A0A423TG80	Small nuclear ribonucleoprotein Sm D3.	Sm domain-containing protein.	0.902
C7M84_003261	C7M84_006562	A0A3R7P7Z1	K4K5Y2	Small nuclear ribonucleoprotein Sm D3.	Small nuclear ribonucleoprotein G.	0.999
C7M84_003261	C7M84_008268	A0A3R7P7Z1	A0A3R7MZE3	Small nuclear ribonucleoprotein Sm D3.	Small nuclear ribonucleoprotein polypeptide G.	0.991
C7M84_003261	C7M84_009129	A0A3R7P7Z1	A0A3R7MBV4	Small nuclear ribonucleoprotein Sm D3.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.999
C7M84_003261	C7M84_011608	A0A3R7P7Z1	A0A3R7M2N9	Small nuclear ribonucleoprotein Sm D3.	Putative N-alpha-acetyltransferase 38, NatC auxiliary subunit.	0.997
C7M84_003261	C7M84_022707	A0A3R7P7Z1	A0A423U5Z7	Small nuclear ribonucleoprotein Sm D3.	Putative U6 snRNA-associated Sm-like protein LSm7.	0.993
C7M84_003261	C7M84_023873	A0A3R7P7Z1	A0A3R7MQ49	Small nuclear ribonucleoprotein Sm D3.	Sm domain-containing protein.	0.907

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