(5 nodes) Mixed, incl. FliP family, and FHIPEP family network (Vibrio parahaemolyticus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KOH17826.1	Low calcium response locus protein D; Derived by automated computational analysis using gene prediction method: Protein Homology. (705 aa)
	ssaR	Type III secretion system protein SsaR; Part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response; Derived by automated computational analysis using gene prediction method: Protein Homology. (216 aa)
	KOH17836.1	Preprotein translocase S; Derived by automated computational analysis using gene prediction method: Protein Homology. (88 aa)
	KOH17837.1	Preprotein translocase T; Derived by automated computational analysis using gene prediction method: Protein Homology. (261 aa)
	KOH17838.1	Preprotein translocase U; Derived by automated computational analysis using gene prediction method: Protein Homology. (351 aa)

Your Current Organism:

Vibrio parahaemolyticus

NCBI taxonomy Id: 670
Other names: ATCC 17802, Beneckea parahaemolytica, CAIM 320, CCUG 14474, CCUG 15657, CCUG 4224, CIP 75.2, DSM 10027, IFO 12711, LMG 2850, LMG:2850, NBRC 12711, NCCB 77010, NCCB 77018, NCTC 10903, NRRL B-4167, Oceanomonas parahaemolytica, Pasteurella parahaemolytica, V. parahaemolyticus

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KOH17826.1	KOH17836.1	ACZ92_16655	ACZ92_16710	Low calcium response locus protein D; Derived by automated computational analysis using gene prediction method: Protein Homology.	Preprotein translocase S; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
KOH17826.1	KOH17837.1	ACZ92_16655	ACZ92_16715	Low calcium response locus protein D; Derived by automated computational analysis using gene prediction method: Protein Homology.	Preprotein translocase T; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
KOH17826.1	KOH17838.1	ACZ92_16655	ACZ92_16720	Low calcium response locus protein D; Derived by automated computational analysis using gene prediction method: Protein Homology.	Preprotein translocase U; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.977
KOH17826.1	ssaR	ACZ92_16655	ACZ92_16705	Low calcium response locus protein D; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type III secretion system protein SsaR; Part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
KOH17836.1	KOH17826.1	ACZ92_16710	ACZ92_16655	Preprotein translocase S; Derived by automated computational analysis using gene prediction method: Protein Homology.	Low calcium response locus protein D; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
KOH17836.1	KOH17837.1	ACZ92_16710	ACZ92_16715	Preprotein translocase S; Derived by automated computational analysis using gene prediction method: Protein Homology.	Preprotein translocase T; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
KOH17836.1	KOH17838.1	ACZ92_16710	ACZ92_16720	Preprotein translocase S; Derived by automated computational analysis using gene prediction method: Protein Homology.	Preprotein translocase U; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.989
KOH17836.1	ssaR	ACZ92_16710	ACZ92_16705	Preprotein translocase S; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type III secretion system protein SsaR; Part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
KOH17837.1	KOH17826.1	ACZ92_16715	ACZ92_16655	Preprotein translocase T; Derived by automated computational analysis using gene prediction method: Protein Homology.	Low calcium response locus protein D; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
KOH17837.1	KOH17836.1	ACZ92_16715	ACZ92_16710	Preprotein translocase T; Derived by automated computational analysis using gene prediction method: Protein Homology.	Preprotein translocase S; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
KOH17837.1	KOH17838.1	ACZ92_16715	ACZ92_16720	Preprotein translocase T; Derived by automated computational analysis using gene prediction method: Protein Homology.	Preprotein translocase U; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
KOH17837.1	ssaR	ACZ92_16715	ACZ92_16705	Preprotein translocase T; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type III secretion system protein SsaR; Part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
KOH17838.1	KOH17826.1	ACZ92_16720	ACZ92_16655	Preprotein translocase U; Derived by automated computational analysis using gene prediction method: Protein Homology.	Low calcium response locus protein D; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.977
KOH17838.1	KOH17836.1	ACZ92_16720	ACZ92_16710	Preprotein translocase U; Derived by automated computational analysis using gene prediction method: Protein Homology.	Preprotein translocase S; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.989
KOH17838.1	KOH17837.1	ACZ92_16720	ACZ92_16715	Preprotein translocase U; Derived by automated computational analysis using gene prediction method: Protein Homology.	Preprotein translocase T; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
KOH17838.1	ssaR	ACZ92_16720	ACZ92_16705	Preprotein translocase U; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type III secretion system protein SsaR; Part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
ssaR	KOH17826.1	ACZ92_16705	ACZ92_16655	Type III secretion system protein SsaR; Part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response; Derived by automated computational analysis using gene prediction method: Protein Homology.	Low calcium response locus protein D; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
ssaR	KOH17836.1	ACZ92_16705	ACZ92_16710	Type III secretion system protein SsaR; Part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response; Derived by automated computational analysis using gene prediction method: Protein Homology.	Preprotein translocase S; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
ssaR	KOH17837.1	ACZ92_16705	ACZ92_16715	Type III secretion system protein SsaR; Part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response; Derived by automated computational analysis using gene prediction method: Protein Homology.	Preprotein translocase T; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
ssaR	KOH17838.1	ACZ92_16705	ACZ92_16720	Type III secretion system protein SsaR; Part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response; Derived by automated computational analysis using gene prediction method: Protein Homology.	Preprotein translocase U; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990

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