121 items (Trypanosoma theileri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TM35_000032610	GN3L_Grn1 domain-containing protein. (690 aa)
	TM35_000481410	Putative RNA helicase. (436 aa)
	TM35_000491360	Pre-mRNA splicing factor ATP-dependent RNA helicase. (714 aa)
	TM35_000721050	Uncharacterized protein. (486 aa)
	TM35_000791100	Uncharacterized protein. (454 aa)
	TM35_002551010	Pre-mRNA splicing factor. (104 aa)
	TM35_000011870	U2 splicing auxiliary factor. (233 aa)
	TM35_000016240	Putative cleavage and polyadenylation specificity factor. (779 aa)
	TM35_000015440	Uncharacterized protein. (500 aa)
	TM35_000014940	Putative ATP-dependent RNA helicase. (719 aa)
	TM35_000025350	Putative mRNA capping methyltransferase. (312 aa)
	TM35_000013030	Putative poly(A) polymerase, putative,polynucleotide adenylyltransferase. (285 aa)
	TM35_000022750	Uncharacterized protein. (241 aa)
	TM35_000024480	Putative ATP-dependent DEAD/H RNA helicase. (885 aa)
	TM35_000023280	Putative 5-3 exonuclease XRNA. (839 aa)
	TM35_000031520	Uncharacterized protein. (423 aa)
	TM35_000043740	Putative nucleic acid binding protein. (375 aa)
	TM35_000034000	RNA-binding protein. (380 aa)
	TM35_000033190	Putative U2 small nuclear ribonucleoprotein 40K. (347 aa)
	TM35_000054550	Cleavage and polyadenylation specificity factor subunit 2. (800 aa)
	TM35_000044510	Spt4 domain-containing protein. (155 aa)
	TM35_000042800	PRP8 protein. (2396 aa)
	TM35_000052350	Uncharacterized protein. (650 aa)
	TM35_000042060	Chaperone protein DnaJ. (491 aa)
	TM35_000041390	Uncharacterized protein. (623 aa)
	TM35_000054220	Rbd-Unit. (209 aa)
	TM35_000063350	MI domain-containing protein. (610 aa)
	TM35_000053130	Putative eukaryotic translation initiation factor 3 subunit. (326 aa)
	TM35_000051480	Uncharacterized protein. (625 aa)
	TM35_000061840	RRM domain-containing protein. (1067 aa)
	TM35_000064600	CLP1_P domain-containing protein. (447 aa)
	TM35_000061780	Protein kinase domain-containing protein. (928 aa)
	TM35_000063910	Parafibromin. (380 aa)
	TM35_000074670	WD_REPEATS_REGION domain-containing protein. (443 aa)
	TM35_000062400	Cwf21 domain-containing protein. (182 aa)
	TM35_000061960	Mitochondrial RNA editing ligase 1. (466 aa)
	TM35_000061990	Uncharacterized protein. (560 aa)
	TM35_000061390	FIP1-like protein. (320 aa)
	TM35_000072570	Putative pre-mRNA cleavage complex II Clp1 protein. (421 aa)
	TM35_000074880	Ubiquitin hydrolase. (1090 aa)
	TM35_000074510	Nuclear cap-binding protein subunit 2. (187 aa)
	TM35_000074480	Putative spliceosome-associated protein. (462 aa)
	TM35_000073180	Splicing factor 3A. (541 aa)
	TM35_000071190	Serine/arginine-rich protein specific kinase SRPK. (727 aa)
	TM35_000071210	Mago nashi-like protein. (165 aa)
	TM35_000084050	RNA-binding protein. (120 aa)
	TM35_000084040	RNA-binding protein. (119 aa)
	TM35_000081360	Branch point binding protein. (269 aa)
	TM35_000082540	Trans-splicing factor. (356 aa)
	TM35_000082150	Pleiotropic regulator 1. (464 aa)
	TM35_000081600	Uncharacterized protein. (784 aa)
	TM35_000101080	Nop domain-containing protein. (239 aa)
	TM35_000092380	Uncharacterized protein. (393 aa)
	TM35_000081120	Uncharacterized protein. (689 aa)
	TM35_000111640	WD_REPEATS_REGION domain-containing protein. (481 aa)
	TM35_000091960	U2 small nuclear ribonucleoprotein B. (114 aa)
	TM35_000111830	Uncharacterized protein. (1047 aa)
	TM35_000091420	RNA-binding protein. (263 aa)
	TM35_000091340	Smad nuclear-interacting protein 1. (274 aa)
	TM35_000102200	XRN_N domain-containing protein. (906 aa)
	TM35_000101120	U1 small nuclear ribonucleoprotein. (273 aa)
	TM35_000111820	U6 snRNA-associated Sm-like protein LSm8. (130 aa)
	TM35_000111250	Polyribonucleotide 5-hydroxyl-kinase. (441 aa)
	TM35_000111660	SLBP_RNA_bind domain-containing protein. (664 aa)
	TM35_000121630	Putative leucine-rich repeat protein. (305 aa)
	TM35_000132610	5-3 exonuclease XRNC. (880 aa)
	TM35_000132300	Spliceosomal U5 snRNP-specific protein. (168 aa)
	TM35_000131050	Pre-mRNA-splicing factor SYF1. (778 aa)
	TM35_000141860	Pre-mRNA-splicing factor 38A. (201 aa)
	TM35_000151350	Pre-mRNA splicing factor. (1069 aa)
	TM35_000162040	mRNA cap 0 methyltransferase domain-containing protein. (1062 aa)
	TM35_000172830	Polypyrimidine binding protein. (504 aa)
	TM35_000172840	Uncharacterized protein. (473 aa)
	TM35_000172980	Pab1p-dependent poly(A) ribonuclease subunit. (506 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (113 aa)
	TM35_000201790	G-patch domain-containing protein. (197 aa)
	TM35_000172290	Putative cleavage and polyadenylation specificity factor. (1471 aa)
	TM35_000212660	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (292 aa)
	TM35_000171170	Putative U5 small nuclear ribonucleoprotein component. (964 aa)
	TM35_000171280	RRM domain-containing protein. (282 aa)
	TM35_000182690	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (126 aa)
	TM35_000212160	RNA-binding protein 8A. (200 aa)
	TM35_000182290	SNW domain-containing protein 1. (460 aa)
	TM35_000191870	Prp18 domain-containing protein. (425 aa)
	TM35_000211250	RNA-binding protein. (182 aa)
	TM35_000201770	DBR1 domain-containing protein. (547 aa)
	TM35_000017240	Putative RNA-binding protein. (388 aa)
	TM35_000012170	U2AF65-like splicing factor. (917 aa)
	TM35_000201670	Putative ATP-dependent RNA helicase. (2336 aa)
	TM35_000191060	Methyltransferase. (1027 aa)
	TM35_000202250	tRNA-dihydrouridine synthase 3. (540 aa)
	TM35_000201840	Putative cell division control protein. (773 aa)
	TM35_000201460	Putative 5-3 exonuclease XRNB, putative,exoribonuclease 2. (1074 aa)
	TM35_000222870	Uncharacterized protein. (955 aa)
	TM35_000212180	Putative RNA-binding protein. (161 aa)
	TM35_000211920	Protein kinase domain-containing protein. (934 aa)
	TM35_000251160	ATP-dependent DEAD/H RNA helicase; Belongs to the DEAD box helicase family. (779 aa)
	TM35_000221210	PRP1_N domain-containing protein. (1080 aa)
	TM35_000232470	Small nuclear ribonucleoprotein Sm D2. (111 aa)
	TM35_000241830	CactinC_cactus domain-containing protein. (616 aa)
	TM35_000271890	Splicing factor TSR1. (411 aa)
	TM35_000241570	Splicing factor 3B subunit 1. (1112 aa)
	TM35_000241140	Putative U5 snRNP-specific 40 kDa protein. (323 aa)
	TM35_000272250	Uncharacterized protein. (923 aa)
	TM35_000281290	Putative ATP-dependent DEAD/H RNA helicase. (1000 aa)
	TM35_000271050	Uncharacterized protein. (584 aa)
	TM35_000291400	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (695 aa)
	TM35_000332170	Putative splicing factor 3 subunit. (494 aa)
	TM35_000352240	RNA-binding protein. (151 aa)
	TM35_000312320	Putative RNA-binding protein 5. (222 aa)
	TM35_000351130	RNA-binding protein. (318 aa)
	TM35_000331350	SLBP_RNA_bind domain-containing protein. (441 aa)
	TM35_000371730	PHD finger-like domain-containing protein 5A. (110 aa)
	TM35_000381140	Uncharacterized protein. (910 aa)
	TM35_000341460	Methyltransferase. (369 aa)
	TM35_000371260	Pre-mRNA-splicing factor ISY1. (260 aa)
	TM35_000411690	Putative mucin-associated surface protein (MASP). (511 aa)
	TM35_000371870	Putative pre-mRNA branch site protein p14. (117 aa)
	TM35_000381520	CPSF_A domain-containing protein. (1862 aa)
	TM35_000381200	Putative ATP-dependent RNA helicase. (959 aa)
	TM35_000391780	U1-type domain-containing protein. (120 aa)

Your Current Organism:

Trypanosoma theileri

NCBI taxonomy Id: 67003
Other names: T. theileri

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM4	TM35_000015440	A0A1X0NUP3	A0A1X0P9Q5	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.579
LSM4	TM35_000022750	A0A1X0NUP3	A0A1X0P8N9	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.618
LSM4	TM35_000033190	A0A1X0NUP3	A0A1X0P6L0	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Putative U2 small nuclear ribonucleoprotein 40K.	0.767
LSM4	TM35_000042060	A0A1X0NUP3	A0A1X0P4Z0	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Chaperone protein DnaJ.	0.862
LSM4	TM35_000042800	A0A1X0NUP3	A0A1X0P548	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	PRP8 protein.	0.980
LSM4	TM35_000051480	A0A1X0NUP3	A0A1X0P3Q4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.744
LSM4	TM35_000052350	A0A1X0NUP3	A0A1X0P521	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.754
LSM4	TM35_000061990	A0A1X0NUP3	A0A1X0P2M3	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.996
LSM4	TM35_000073180	A0A1X0NUP3	A0A1X0P1R3	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Splicing factor 3A.	0.958
LSM4	TM35_000074480	A0A1X0NUP3	A0A1X0P248	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Putative spliceosome-associated protein.	0.881
LSM4	TM35_000074510	A0A1X0NUP3	A0A1X0P277	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Nuclear cap-binding protein subunit 2.	0.816
LSM4	TM35_000082150	A0A1X0NUP3	A0A1X0P0F0	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Pleiotropic regulator 1.	0.600
LSM4	TM35_000082540	A0A1X0NUP3	A0A1X0P0H6	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Trans-splicing factor.	0.877
LSM4	TM35_000091340	A0A1X0NUP3	A0A1X0NZG4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Smad nuclear-interacting protein 1.	0.904
LSM4	TM35_000091420	A0A1X0NUP3	A0A1X0NZI1	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	RNA-binding protein.	0.744
LSM4	TM35_000091960	A0A1X0NUP3	A0A1X0NZM5	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U2 small nuclear ribonucleoprotein B.	0.901
LSM4	TM35_000101080	A0A1X0NUP3	A0A1X0P0A6	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Nop domain-containing protein.	0.877
LSM4	TM35_000101120	A0A1X0NUP3	A0A1X0NYS6	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U1 small nuclear ribonucleoprotein.	0.821
LSM4	TM35_000111820	A0A1X0NUP3	A0A1X0NYL8	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm8.	0.999
LSM4	TM35_000111830	A0A1X0NUP3	A0A1X0NZK7	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.767