81 items (Trypanosoma theileri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TM35_000016720	Small nuclear ribonucleoprotein Sm D3. (115 aa)
	TM35_001771010	Cyclophilin. (195 aa)
	TM35_002551010	Pre-mRNA splicing factor. (104 aa)
	TM35_000791100	Uncharacterized protein. (454 aa)
	TM35_000721050	Uncharacterized protein. (486 aa)
	TM35_000591200	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (197 aa)
	TM35_000481180	Putative pumilio/PUF RNA binding protein 3. (564 aa)
	TM35_000491360	Pre-mRNA splicing factor ATP-dependent RNA helicase. (714 aa)
	TM35_000401040	Putative pumilio/PUF RNA binding protein 5. (437 aa)
	TM35_000391780	U1-type domain-containing protein. (120 aa)
	TM35_000381220	SURP motif domain-containing protein. (737 aa)
	TM35_000371870	Putative pre-mRNA branch site protein p14. (117 aa)
	TM35_000371840	Putative RNA helicase. (953 aa)
	TM35_000371260	Pre-mRNA-splicing factor ISY1. (260 aa)
	TM35_000371730	PHD finger-like domain-containing protein 5A. (110 aa)
	TM35_000351130	RNA-binding protein. (318 aa)
	TM35_000321460	Putative pumilio/PUF RNA binding protein 4. (1025 aa)
	TM35_000352240	RNA-binding protein. (151 aa)
	TM35_000332170	Putative splicing factor 3 subunit. (494 aa)
	TM35_000271050	Uncharacterized protein. (584 aa)
	TM35_000281290	Putative ATP-dependent DEAD/H RNA helicase. (1000 aa)
	TM35_000272250	Uncharacterized protein. (923 aa)
	TM35_000251880	WD domain-containing protein. (419 aa)
	TM35_000281050	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. (497 aa)
	TM35_000241140	Putative U5 snRNP-specific 40 kDa protein. (323 aa)
	TM35_000271890	Splicing factor TSR1. (411 aa)
	TM35_000241830	CactinC_cactus domain-containing protein. (616 aa)
	TM35_000232470	Small nuclear ribonucleoprotein Sm D2. (111 aa)
	TM35_000231940	Heterogeneous nuclear ribonucleoprotein H/F. (479 aa)
	TM35_000212180	Putative RNA-binding protein. (161 aa)
	TM35_000201840	Putative cell division control protein. (773 aa)
	TM35_000231510	Small nuclear ribonucleoprotein. (105 aa)
	TM35_000191510	Peptidyl-prolyl cis-trans isomerase. (395 aa)
	TM35_000201670	Putative ATP-dependent RNA helicase. (2336 aa)
	TM35_000191870	Prp18 domain-containing protein. (425 aa)
	TM35_000182290	SNW domain-containing protein 1. (460 aa)
	TM35_000171170	Putative U5 small nuclear ribonucleoprotein component. (964 aa)
	TM35_000201790	G-patch domain-containing protein. (197 aa)
	TM35_000172840	Uncharacterized protein. (473 aa)
	TM35_000172830	Polypyrimidine binding protein. (504 aa)
	TM35_000172350	RNA polymerase-like protein. (190 aa)
	TM35_000151350	Pre-mRNA splicing factor. (1069 aa)
	TM35_000141860	Pre-mRNA-splicing factor 38A. (201 aa)
	TM35_000131050	Pre-mRNA-splicing factor SYF1. (778 aa)
	TM35_000121630	Putative leucine-rich repeat protein. (305 aa)
	TM35_000122980	Putative U4/U6 small nuclear ribonuclear protein. (652 aa)
	TM35_000111820	U6 snRNA-associated Sm-like protein LSm8. (130 aa)
	TM35_000112570	Mitochondrial RNA-binding protein. (139 aa)
	TM35_000091340	Smad nuclear-interacting protein 1. (274 aa)
	TM35_000111830	Uncharacterized protein. (1047 aa)
	TM35_000111640	WD_REPEATS_REGION domain-containing protein. (481 aa)
	TM35_000092380	Uncharacterized protein. (393 aa)
	TM35_000101080	Nop domain-containing protein. (239 aa)
	TM35_000081600	Uncharacterized protein. (784 aa)
	TM35_000082150	Pleiotropic regulator 1. (464 aa)
	TM35_000082540	Trans-splicing factor. (356 aa)
	TM35_000081360	Branch point binding protein. (269 aa)
	TM35_000083090	Nkap_C domain-containing protein. (328 aa)
	TM35_000071210	Mago nashi-like protein. (165 aa)
	TM35_000073180	Splicing factor 3A. (541 aa)
	TM35_000083270	WD_REPEATS_REGION domain-containing protein. (553 aa)
	TM35_000074480	Putative spliceosome-associated protein. (462 aa)
	TM35_000061990	Uncharacterized protein. (560 aa)
	TM35_000061840	RRM domain-containing protein. (1067 aa)
	TM35_000063350	MI domain-containing protein. (610 aa)
	TM35_000042060	Chaperone protein DnaJ. (491 aa)
	TM35_000052350	Uncharacterized protein. (650 aa)
	TM35_000042800	PRP8 protein. (2396 aa)
	TM35_000053450	Putative DNA-directed RNA polymerase II. (132 aa)
	TM35_000033190	Putative U2 small nuclear ribonucleoprotein 40K. (347 aa)
	TM35_000043140	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (179 aa)
	TM35_000034350	Putative cyclophilin type peptidyl-prolyl cis-trans isomerase. (960 aa)
	TM35_000033620	Putative RNA-binding protein. (420 aa)
	TM35_000023440	Universal minicircle sequence binding protein (UMSBP). (205 aa)
	TM35_000024480	Putative ATP-dependent DEAD/H RNA helicase. (885 aa)
	TM35_000024830	Putative small nuclear ribonucleoprotein. (131 aa)
	TM35_000025430	Putative pumilio/PUF RNA binding protein 1. (576 aa)
	TM35_000022750	Uncharacterized protein. (241 aa)
	TM35_000023450	Poly-zinc finger protein 2. (194 aa)
	TM35_000014940	Putative ATP-dependent RNA helicase. (719 aa)
	TM35_000015440	Uncharacterized protein. (500 aa)

Your Current Organism:

Trypanosoma theileri

NCBI taxonomy Id: 67003
Other names: T. theileri

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TM35_000014940	TM35_000016720	A0A1X0P9K6	A0A1X0PAE8	Putative ATP-dependent RNA helicase.	Small nuclear ribonucleoprotein Sm D3.	0.881
TM35_000014940	TM35_000022750	A0A1X0P9K6	A0A1X0P8N9	Putative ATP-dependent RNA helicase.	Uncharacterized protein.	0.838
TM35_000014940	TM35_000024480	A0A1X0P9K6	A0A1X0P872	Putative ATP-dependent RNA helicase.	Putative ATP-dependent DEAD/H RNA helicase.	0.408
TM35_000014940	TM35_000024830	A0A1X0P9K6	A0A1X0P880	Putative ATP-dependent RNA helicase.	Putative small nuclear ribonucleoprotein.	0.881
TM35_000014940	TM35_000033190	A0A1X0P9K6	A0A1X0P6L0	Putative ATP-dependent RNA helicase.	Putative U2 small nuclear ribonucleoprotein 40K.	0.785
TM35_000014940	TM35_000033620	A0A1X0P9K6	A0A1X0P7S1	Putative ATP-dependent RNA helicase.	Putative RNA-binding protein.	0.466
TM35_000014940	TM35_000034350	A0A1X0P9K6	A0A1X0P6X3	Putative ATP-dependent RNA helicase.	Putative cyclophilin type peptidyl-prolyl cis-trans isomerase.	0.471
TM35_000014940	TM35_000042060	A0A1X0P9K6	A0A1X0P4Z0	Putative ATP-dependent RNA helicase.	Chaperone protein DnaJ.	0.609
TM35_000014940	TM35_000042800	A0A1X0P9K6	A0A1X0P548	Putative ATP-dependent RNA helicase.	PRP8 protein.	0.858
TM35_000014940	TM35_000063350	A0A1X0P9K6	A0A1X0P4F9	Putative ATP-dependent RNA helicase.	MI domain-containing protein.	0.652
TM35_000014940	TM35_000073180	A0A1X0P9K6	A0A1X0P1R3	Putative ATP-dependent RNA helicase.	Splicing factor 3A.	0.744
TM35_000014940	TM35_000074480	A0A1X0P9K6	A0A1X0P248	Putative ATP-dependent RNA helicase.	Putative spliceosome-associated protein.	0.656
TM35_000014940	TM35_000081360	A0A1X0P9K6	A0A1X0P0K4	Putative ATP-dependent RNA helicase.	Branch point binding protein.	0.418
TM35_000014940	TM35_000081600	A0A1X0P9K6	A0A1X0P0C5	Putative ATP-dependent RNA helicase.	Uncharacterized protein.	0.828
TM35_000014940	TM35_000082150	A0A1X0P9K6	A0A1X0P0F0	Putative ATP-dependent RNA helicase.	Pleiotropic regulator 1.	0.835
TM35_000014940	TM35_000083090	A0A1X0P9K6	A0A1X0P0Z2	Putative ATP-dependent RNA helicase.	Nkap_C domain-containing protein.	0.429
TM35_000014940	TM35_000083270	A0A1X0P9K6	A0A1X0P1X3	Putative ATP-dependent RNA helicase.	WD_REPEATS_REGION domain-containing protein.	0.421
TM35_000014940	TM35_000091340	A0A1X0P9K6	A0A1X0NZG4	Putative ATP-dependent RNA helicase.	Smad nuclear-interacting protein 1.	0.415
TM35_000014940	TM35_000092380	A0A1X0P9K6	A0A1X0P065	Putative ATP-dependent RNA helicase.	Uncharacterized protein.	0.874
TM35_000014940	TM35_000111640	A0A1X0P9K6	A0A1X0NZP7	Putative ATP-dependent RNA helicase.	WD_REPEATS_REGION domain-containing protein.	0.870