6 items (Trypanosoma theileri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TM35_000371220	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. (971 aa)
	TM35_000371860	AP-2 complex subunit mu; Belongs to the adaptor complexes medium subunit family. (416 aa)
	TM35_000015010	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (143 aa)
	TM35_000023460	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1706 aa)
	TM35_000024750	Small subunit ribosomal protein S27Ae. (151 aa)
	TM35_000301640	Putative ubiquitin-like protein. (704 aa)

Your Current Organism:

Trypanosoma theileri

NCBI taxonomy Id: 67003
Other names: T. theileri

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TM35_000015010	TM35_000023460	A0A1X0P9M2	A0A1X0P986	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.934
TM35_000015010	TM35_000024750	A0A1X0P9M2	A0A1X0P981	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	Small subunit ribosomal protein S27Ae.	0.590
TM35_000015010	TM35_000301640	A0A1X0P9M2	A0A1X0NN39	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	Putative ubiquitin-like protein.	0.590
TM35_000015010	TM35_000371220	A0A1X0P9M2	A0A1X0NLY4	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	0.999
TM35_000015010	TM35_000371860	A0A1X0P9M2	A0A1X0NL86	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	AP-2 complex subunit mu; Belongs to the adaptor complexes medium subunit family.	0.999
TM35_000023460	TM35_000015010	A0A1X0P986	A0A1X0P9M2	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.934
TM35_000023460	TM35_000024750	A0A1X0P986	A0A1X0P981	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Small subunit ribosomal protein S27Ae.	0.601
TM35_000023460	TM35_000301640	A0A1X0P986	A0A1X0NN39	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Putative ubiquitin-like protein.	0.601
TM35_000023460	TM35_000371220	A0A1X0P986	A0A1X0NLY4	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	0.956
TM35_000023460	TM35_000371860	A0A1X0P986	A0A1X0NL86	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	AP-2 complex subunit mu; Belongs to the adaptor complexes medium subunit family.	0.945
TM35_000024750	TM35_000015010	A0A1X0P981	A0A1X0P9M2	Small subunit ribosomal protein S27Ae.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.590
TM35_000024750	TM35_000023460	A0A1X0P981	A0A1X0P986	Small subunit ribosomal protein S27Ae.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.601
TM35_000024750	TM35_000371220	A0A1X0P981	A0A1X0NLY4	Small subunit ribosomal protein S27Ae.	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	0.597
TM35_000024750	TM35_000371860	A0A1X0P981	A0A1X0NL86	Small subunit ribosomal protein S27Ae.	AP-2 complex subunit mu; Belongs to the adaptor complexes medium subunit family.	0.622
TM35_000301640	TM35_000015010	A0A1X0NN39	A0A1X0P9M2	Putative ubiquitin-like protein.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.590
TM35_000301640	TM35_000023460	A0A1X0NN39	A0A1X0P986	Putative ubiquitin-like protein.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.601
TM35_000301640	TM35_000371220	A0A1X0NN39	A0A1X0NLY4	Putative ubiquitin-like protein.	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	0.597
TM35_000301640	TM35_000371860	A0A1X0NN39	A0A1X0NL86	Putative ubiquitin-like protein.	AP-2 complex subunit mu; Belongs to the adaptor complexes medium subunit family.	0.622
TM35_000371220	TM35_000015010	A0A1X0NLY4	A0A1X0P9M2	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.999
TM35_000371220	TM35_000023460	A0A1X0NLY4	A0A1X0P986	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.956