(10 nodes) Mixed, incl. SMN complex, and Gemini of coiled bodies network (Heterostelium album)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PPL_00480	Uncharacterized protein. (217 aa)
	gemin5	Component of gems 5. (773 aa)
	prmt5	Protein arginine N-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. (687 aa)
	mdn1	Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family. (5639 aa)
	gemin1	Component of gems 1. (274 aa)
	pwp1	WD40 repeat-containing protein. (357 aa)
	strap	WD40 repeat-containing protein. (315 aa)
	ddx20	Putative RNA helicase; Belongs to the DEAD box helicase family. (701 aa)
	PPL_10877	Uncharacterized protein. (1026 aa)
	PPL_11076	Putative small nuclear ribonucleoparticle-associated protein. (150 aa)

Your Current Organism:

Heterostelium album

NCBI taxonomy Id: 670386
Other names: H. album PN500, Heterostelium album PN500, Heterostelium pallidum PN500, Polysphondylium pallidum PN500

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PPL_00480	PPL_10877	D3AWK5	D3BS85	Uncharacterized protein.	Uncharacterized protein.	0.454
PPL_00480	PPL_11076	D3AWK5	D3BSV6	Uncharacterized protein.	Putative small nuclear ribonucleoparticle-associated protein.	0.946
PPL_00480	ddx20	D3AWK5	D3BRI1	Uncharacterized protein.	Putative RNA helicase; Belongs to the DEAD box helicase family.	0.479
PPL_00480	gemin1	D3AWK5	D3B1K2	Uncharacterized protein.	Component of gems 1.	0.958
PPL_00480	mdn1	D3AWK5	D3B0N0	Uncharacterized protein.	Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family.	0.454
PPL_00480	prmt5	D3AWK5	D3AZB0	Uncharacterized protein.	Protein arginine N-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily.	0.991
PPL_00480	pwp1	D3AWK5	D3B6P1	Uncharacterized protein.	WD40 repeat-containing protein.	0.868
PPL_00480	strap	D3AWK5	D3BG93	Uncharacterized protein.	WD40 repeat-containing protein.	0.470
PPL_10877	PPL_00480	D3BS85	D3AWK5	Uncharacterized protein.	Uncharacterized protein.	0.454
PPL_10877	PPL_11076	D3BS85	D3BSV6	Uncharacterized protein.	Putative small nuclear ribonucleoparticle-associated protein.	0.641
PPL_10877	ddx20	D3BS85	D3BRI1	Uncharacterized protein.	Putative RNA helicase; Belongs to the DEAD box helicase family.	0.651
PPL_10877	gemin1	D3BS85	D3B1K2	Uncharacterized protein.	Component of gems 1.	0.718
PPL_11076	PPL_00480	D3BSV6	D3AWK5	Putative small nuclear ribonucleoparticle-associated protein.	Uncharacterized protein.	0.946
PPL_11076	PPL_10877	D3BSV6	D3BS85	Putative small nuclear ribonucleoparticle-associated protein.	Uncharacterized protein.	0.641
PPL_11076	ddx20	D3BSV6	D3BRI1	Putative small nuclear ribonucleoparticle-associated protein.	Putative RNA helicase; Belongs to the DEAD box helicase family.	0.773
PPL_11076	gemin1	D3BSV6	D3B1K2	Putative small nuclear ribonucleoparticle-associated protein.	Component of gems 1.	0.936
PPL_11076	gemin5	D3BSV6	D3AWS3	Putative small nuclear ribonucleoparticle-associated protein.	Component of gems 5.	0.436
PPL_11076	mdn1	D3BSV6	D3B0N0	Putative small nuclear ribonucleoparticle-associated protein.	Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family.	0.641
PPL_11076	prmt5	D3BSV6	D3AZB0	Putative small nuclear ribonucleoparticle-associated protein.	Protein arginine N-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily.	0.618
PPL_11076	pwp1	D3BSV6	D3B6P1	Putative small nuclear ribonucleoparticle-associated protein.	WD40 repeat-containing protein.	0.420