5 items (Gloeophyllum trabeum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	S7PVH5_GLOTA	BING4CT-domain-containing protein. (616 aa)
	S7PW56_GLOTA	WD40 repeat-like protein. (446 aa)
	S7QLQ7_GLOTA	Small-subunit processome. (332 aa)
	S7REW6_GLOTA	Sas10 domain-containing protein. (672 aa)
	S7S1R3_GLOTA	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (393 aa)

Your Current Organism:

Gloeophyllum trabeum

NCBI taxonomy Id: 670483
Other names: G. trabeum ATCC 11539, Gloeophyllum trabeum ATCC 11539

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
S7PVH5_GLOTA	S7PW56_GLOTA	S7PVH5	S7PW56	BING4CT-domain-containing protein.	WD40 repeat-like protein.	0.999
S7PVH5_GLOTA	S7QLQ7_GLOTA	S7PVH5	S7QLQ7	BING4CT-domain-containing protein.	Small-subunit processome.	0.999
S7PVH5_GLOTA	S7REW6_GLOTA	S7PVH5	S7REW6	BING4CT-domain-containing protein.	Sas10 domain-containing protein.	0.999
S7PVH5_GLOTA	S7S1R3_GLOTA	S7PVH5	S7S1R3	BING4CT-domain-containing protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.999
S7PW56_GLOTA	S7PVH5_GLOTA	S7PW56	S7PVH5	WD40 repeat-like protein.	BING4CT-domain-containing protein.	0.999
S7PW56_GLOTA	S7QLQ7_GLOTA	S7PW56	S7QLQ7	WD40 repeat-like protein.	Small-subunit processome.	0.998
S7PW56_GLOTA	S7REW6_GLOTA	S7PW56	S7REW6	WD40 repeat-like protein.	Sas10 domain-containing protein.	0.998
S7PW56_GLOTA	S7S1R3_GLOTA	S7PW56	S7S1R3	WD40 repeat-like protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.999
S7QLQ7_GLOTA	S7PVH5_GLOTA	S7QLQ7	S7PVH5	Small-subunit processome.	BING4CT-domain-containing protein.	0.999
S7QLQ7_GLOTA	S7PW56_GLOTA	S7QLQ7	S7PW56	Small-subunit processome.	WD40 repeat-like protein.	0.998
S7QLQ7_GLOTA	S7REW6_GLOTA	S7QLQ7	S7REW6	Small-subunit processome.	Sas10 domain-containing protein.	0.999
S7QLQ7_GLOTA	S7S1R3_GLOTA	S7QLQ7	S7S1R3	Small-subunit processome.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.999
S7REW6_GLOTA	S7PVH5_GLOTA	S7REW6	S7PVH5	Sas10 domain-containing protein.	BING4CT-domain-containing protein.	0.999
S7REW6_GLOTA	S7PW56_GLOTA	S7REW6	S7PW56	Sas10 domain-containing protein.	WD40 repeat-like protein.	0.998
S7REW6_GLOTA	S7QLQ7_GLOTA	S7REW6	S7QLQ7	Sas10 domain-containing protein.	Small-subunit processome.	0.999
S7REW6_GLOTA	S7S1R3_GLOTA	S7REW6	S7S1R3	Sas10 domain-containing protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.999
S7S1R3_GLOTA	S7PVH5_GLOTA	S7S1R3	S7PVH5	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	BING4CT-domain-containing protein.	0.999
S7S1R3_GLOTA	S7PW56_GLOTA	S7S1R3	S7PW56	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	WD40 repeat-like protein.	0.999
S7S1R3_GLOTA	S7QLQ7_GLOTA	S7S1R3	S7QLQ7	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	Small-subunit processome.	0.999
S7S1R3_GLOTA	S7REW6_GLOTA	S7S1R3	S7REW6	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	Sas10 domain-containing protein.	0.999