7 items (Gloeophyllum trabeum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	S7PS98_GLOTA	Uncharacterized protein. (103 aa)
	S7Q1D3_GLOTA	Uncharacterized protein. (206 aa)
	S7QEE7_GLOTA	Uncharacterized protein. (271 aa)
	S7RFG3_GLOTA	Cytochrome P450. (80 aa)
	S7RJX0_GLOTA	Cytochrome P450. (239 aa)
	S7RRJ5_GLOTA	Cytochrome P450. (330 aa)
	S7RV07_GLOTA	Cytochrome P450; Belongs to the cytochrome P450 family. (123 aa)

Your Current Organism:

Gloeophyllum trabeum

NCBI taxonomy Id: 670483
Other names: G. trabeum ATCC 11539, Gloeophyllum trabeum ATCC 11539

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
S7Q1D3_GLOTA	S7QEE7_GLOTA	S7Q1D3	S7QEE7	Uncharacterized protein.	Uncharacterized protein.	0.444
S7Q1D3_GLOTA	S7RV07_GLOTA	S7Q1D3	S7RV07	Uncharacterized protein.	Cytochrome P450; Belongs to the cytochrome P450 family.	0.454
S7QEE7_GLOTA	S7Q1D3_GLOTA	S7QEE7	S7Q1D3	Uncharacterized protein.	Uncharacterized protein.	0.444
S7QEE7_GLOTA	S7RV07_GLOTA	S7QEE7	S7RV07	Uncharacterized protein.	Cytochrome P450; Belongs to the cytochrome P450 family.	0.417
S7RV07_GLOTA	S7Q1D3_GLOTA	S7RV07	S7Q1D3	Cytochrome P450; Belongs to the cytochrome P450 family.	Uncharacterized protein.	0.454
S7RV07_GLOTA	S7QEE7_GLOTA	S7RV07	S7QEE7	Cytochrome P450; Belongs to the cytochrome P450 family.	Uncharacterized protein.	0.417