56 items (Gloeophyllum trabeum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	S7PXF7_GLOTA	RNA-binding domain-containing protein. (134 aa)
	S7PXS0_GLOTA	RRM domain-containing protein. (231 aa)
	S7PXT2_GLOTA	RNA-binding domain-containing protein. (212 aa)
	S7PY79_GLOTA	Uncharacterized protein. (376 aa)
	S7Q004_GLOTA	GH16 domain-containing protein. (376 aa)
	S7Q044_GLOTA	Uncharacterized protein. (509 aa)
	S7Q0T9_GLOTA	Uncharacterized protein. (129 aa)
	S7Q1N2_GLOTA	GH16 domain-containing protein. (385 aa)
	S7Q4W3_GLOTA	RRM domain-containing protein. (274 aa)
	S7Q5T8_GLOTA	Endo-beta-glucanase. (317 aa)
	S7Q6G3_GLOTA	RRM domain-containing protein. (214 aa)
	S7Q784_GLOTA	Uncharacterized protein. (161 aa)
	S7Q7J3_GLOTA	Pinin_SDK_memA domain-containing protein. (302 aa)
	S7Q8Z0_GLOTA	Uncharacterized protein. (288 aa)
	S7QBT5_GLOTA	Uncharacterized protein. (244 aa)
	S7QDJ2_GLOTA	RRM domain-containing protein. (418 aa)
	S7QDS0_GLOTA	RNA-binding domain-containing protein. (161 aa)
	S7QF26_GLOTA	Uncharacterized protein. (284 aa)
	S7QF69_GLOTA	Uncharacterized protein. (343 aa)
	S7QFY1_GLOTA	Uncharacterized protein. (591 aa)
	S7QGL7_GLOTA	Uncharacterized protein. (1171 aa)
	S7QH01_GLOTA	Uncharacterized protein. (730 aa)
	S7QHK0_GLOTA	Mago-bind domain-containing protein. (188 aa)
	S7QHU7_GLOTA	Nuclear cap-binding protein subunit 2. (226 aa)
	S7QIG7_GLOTA	Uncharacterized protein. (340 aa)
	S7QJ30_GLOTA	Uncharacterized protein. (2096 aa)
	S7QJ56_GLOTA	RNA-binding domain-containing protein. (288 aa)
	S7QKB1_GLOTA	Uncharacterized protein. (877 aa)
	S7QKP9_GLOTA	Uncharacterized protein. (737 aa)
	S7QLV4_GLOTA	Uncharacterized protein. (576 aa)
	S7QM79_GLOTA	Splicing factor, CC1-like protein. (483 aa)
	S7QMA9_GLOTA	Uncharacterized protein. (268 aa)
	S7QNL0_GLOTA	P-loop containing nucleoside triphosphate hydrolase protein. (437 aa)
	S7R8Q3_GLOTA	Kinase-like protein. (557 aa)
	S7RDA6_GLOTA	RRM domain-containing protein. (230 aa)
	S7RG39_GLOTA	Mago nashi protein. (147 aa)
	S7RNH6_GLOTA	ARM repeat-containing protein. (1047 aa)
	S7RPL6_GLOTA	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (459 aa)
	S7RPP1_GLOTA	Uncharacterized protein. (624 aa)
	S7RPX4_GLOTA	Uncharacterized protein. (354 aa)
	S7RQX0_GLOTA	GH16 domain-containing protein. (324 aa)
	S7RR74_GLOTA	Laminarinase. (314 aa)
	S7RRI2_GLOTA	RNA-binding domain-containing protein. (247 aa)
	S7RSQ5_GLOTA	RRM domain-containing protein. (173 aa)
	S7RSU0_GLOTA	G-patch domain-containing protein. (433 aa)
	S7RTH2_GLOTA	Laminarinase. (317 aa)
	S7RU83_GLOTA	RNA-binding domain-containing protein. (168 aa)
	S7RU96_GLOTA	Uncharacterized protein. (578 aa)
	S7RUD0_GLOTA	Uncharacterized protein. (811 aa)
	S7RWA6_GLOTA	WD40 repeat-like protein. (360 aa)
	S7RWI3_GLOTA	Uncharacterized protein. (213 aa)
	S7RXB9_GLOTA	RNA-binding domain-containing protein. (148 aa)
	S7RXP5_GLOTA	C2H2-type domain-containing protein. (910 aa)
	S7RY61_GLOTA	LUC7-domain-containing protein. (318 aa)
	S7RZM1_GLOTA	Uncharacterized protein. (288 aa)
	S7S2Y7_GLOTA	RNA-binding domain-containing protein. (258 aa)

Your Current Organism:

Gloeophyllum trabeum

NCBI taxonomy Id: 670483
Other names: G. trabeum ATCC 11539, Gloeophyllum trabeum ATCC 11539

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
S7PXF7_GLOTA	S7QF26_GLOTA	S7PXF7	S7QF26	RNA-binding domain-containing protein.	Uncharacterized protein.	0.619
S7PXF7_GLOTA	S7QHU7_GLOTA	S7PXF7	S7QHU7	RNA-binding domain-containing protein.	Nuclear cap-binding protein subunit 2.	0.496
S7PXF7_GLOTA	S7QKB1_GLOTA	S7PXF7	S7QKB1	RNA-binding domain-containing protein.	Uncharacterized protein.	0.486
S7PXF7_GLOTA	S7RXB9_GLOTA	S7PXF7	S7RXB9	RNA-binding domain-containing protein.	RNA-binding domain-containing protein.	0.405
S7PXS0_GLOTA	S7PXT2_GLOTA	S7PXS0	S7PXT2	RRM domain-containing protein.	RNA-binding domain-containing protein.	0.904
S7PXS0_GLOTA	S7Q6G3_GLOTA	S7PXS0	S7Q6G3	RRM domain-containing protein.	RRM domain-containing protein.	0.906
S7PXS0_GLOTA	S7Q7J3_GLOTA	S7PXS0	S7Q7J3	RRM domain-containing protein.	Pinin_SDK_memA domain-containing protein.	0.474
S7PXS0_GLOTA	S7Q8Z0_GLOTA	S7PXS0	S7Q8Z0	RRM domain-containing protein.	Uncharacterized protein.	0.514
S7PXS0_GLOTA	S7QBT5_GLOTA	S7PXS0	S7QBT5	RRM domain-containing protein.	Uncharacterized protein.	0.740
S7PXS0_GLOTA	S7QF26_GLOTA	S7PXS0	S7QF26	RRM domain-containing protein.	Uncharacterized protein.	0.658
S7PXS0_GLOTA	S7QFY1_GLOTA	S7PXS0	S7QFY1	RRM domain-containing protein.	Uncharacterized protein.	0.812
S7PXS0_GLOTA	S7QHU7_GLOTA	S7PXS0	S7QHU7	RRM domain-containing protein.	Nuclear cap-binding protein subunit 2.	0.784
S7PXS0_GLOTA	S7QIG7_GLOTA	S7PXS0	S7QIG7	RRM domain-containing protein.	Uncharacterized protein.	0.688
S7PXS0_GLOTA	S7QJ30_GLOTA	S7PXS0	S7QJ30	RRM domain-containing protein.	Uncharacterized protein.	0.911
S7PXS0_GLOTA	S7QKB1_GLOTA	S7PXS0	S7QKB1	RRM domain-containing protein.	Uncharacterized protein.	0.787
S7PXS0_GLOTA	S7QKP9_GLOTA	S7PXS0	S7QKP9	RRM domain-containing protein.	Uncharacterized protein.	0.969
S7PXS0_GLOTA	S7QLV4_GLOTA	S7PXS0	S7QLV4	RRM domain-containing protein.	Uncharacterized protein.	0.676
S7PXS0_GLOTA	S7QM79_GLOTA	S7PXS0	S7QM79	RRM domain-containing protein.	Splicing factor, CC1-like protein.	0.457
S7PXS0_GLOTA	S7QMA9_GLOTA	S7PXS0	S7QMA9	RRM domain-containing protein.	Uncharacterized protein.	0.457
S7PXS0_GLOTA	S7QNL0_GLOTA	S7PXS0	S7QNL0	RRM domain-containing protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.980