8 items (Gloeophyllum trabeum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	S7QA51_GLOTA	Chromo domain-containing protein. (208 aa)
	S7QFA5_GLOTA	Chromo domain-containing protein. (697 aa)
	S7QM34_GLOTA	Uncharacterized protein. (1763 aa)
	S7REN7_GLOTA	Uncharacterized protein. (633 aa)
	S7RHG9_GLOTA	SET domain-containing protein. (129 aa)
	S7RM03_GLOTA	Uncharacterized protein. (401 aa)
	S7RVU1_GLOTA	SET domain-containing protein. (127 aa)
	S7S409_GLOTA	Uncharacterized protein. (233 aa)

Your Current Organism:

Gloeophyllum trabeum

NCBI taxonomy Id: 670483
Other names: G. trabeum ATCC 11539, Gloeophyllum trabeum ATCC 11539

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
S7QA51_GLOTA	S7QM34_GLOTA	S7QA51	S7QM34	Chromo domain-containing protein.	Uncharacterized protein.	0.774
S7QA51_GLOTA	S7RVU1_GLOTA	S7QA51	S7RVU1	Chromo domain-containing protein.	SET domain-containing protein.	0.870
S7QFA5_GLOTA	S7QM34_GLOTA	S7QFA5	S7QM34	Chromo domain-containing protein.	Uncharacterized protein.	0.750
S7QFA5_GLOTA	S7RM03_GLOTA	S7QFA5	S7RM03	Chromo domain-containing protein.	Uncharacterized protein.	0.476
S7QFA5_GLOTA	S7RVU1_GLOTA	S7QFA5	S7RVU1	Chromo domain-containing protein.	SET domain-containing protein.	0.849
S7QM34_GLOTA	S7QA51_GLOTA	S7QM34	S7QA51	Uncharacterized protein.	Chromo domain-containing protein.	0.774
S7QM34_GLOTA	S7QFA5_GLOTA	S7QM34	S7QFA5	Uncharacterized protein.	Chromo domain-containing protein.	0.750
S7QM34_GLOTA	S7RHG9_GLOTA	S7QM34	S7RHG9	Uncharacterized protein.	SET domain-containing protein.	0.461
S7QM34_GLOTA	S7RM03_GLOTA	S7QM34	S7RM03	Uncharacterized protein.	Uncharacterized protein.	0.461
S7QM34_GLOTA	S7RVU1_GLOTA	S7QM34	S7RVU1	Uncharacterized protein.	SET domain-containing protein.	0.537
S7REN7_GLOTA	S7RHG9_GLOTA	S7REN7	S7RHG9	Uncharacterized protein.	SET domain-containing protein.	0.808
S7REN7_GLOTA	S7RM03_GLOTA	S7REN7	S7RM03	Uncharacterized protein.	Uncharacterized protein.	0.808
S7REN7_GLOTA	S7S409_GLOTA	S7REN7	S7S409	Uncharacterized protein.	Uncharacterized protein.	0.935
S7RHG9_GLOTA	S7QM34_GLOTA	S7RHG9	S7QM34	SET domain-containing protein.	Uncharacterized protein.	0.461
S7RHG9_GLOTA	S7REN7_GLOTA	S7RHG9	S7REN7	SET domain-containing protein.	Uncharacterized protein.	0.808
S7RHG9_GLOTA	S7S409_GLOTA	S7RHG9	S7S409	SET domain-containing protein.	Uncharacterized protein.	0.964
S7RM03_GLOTA	S7QFA5_GLOTA	S7RM03	S7QFA5	Uncharacterized protein.	Chromo domain-containing protein.	0.476
S7RM03_GLOTA	S7QM34_GLOTA	S7RM03	S7QM34	Uncharacterized protein.	Uncharacterized protein.	0.461
S7RM03_GLOTA	S7REN7_GLOTA	S7RM03	S7REN7	Uncharacterized protein.	Uncharacterized protein.	0.808
S7RM03_GLOTA	S7S409_GLOTA	S7RM03	S7S409	Uncharacterized protein.	Uncharacterized protein.	0.964