20 items (Gloeophyllum trabeum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	S7PVH5_GLOTA	BING4CT-domain-containing protein. (616 aa)
	S7PX10_GLOTA	CBF-domain-containing protein. (608 aa)
	S7PZ86_GLOTA	Uncharacterized protein. (86 aa)
	S7Q4W8_GLOTA	Fcf1-domain-containing protein. (194 aa)
	S7Q8G5_GLOTA	Uncharacterized protein. (346 aa)
	S7QIN7_GLOTA	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (311 aa)
	S7QIY6_GLOTA	WD40 repeat-like protein. (957 aa)
	S7QLP6_GLOTA	Uncharacterized protein. (347 aa)
	S7QPR9_GLOTA	Uncharacterized protein. (1479 aa)
	S7R9T9_GLOTA	Fcf2-domain-containing protein. (326 aa)
	S7RC22_GLOTA	Uncharacterized protein. (73 aa)
	S7REF5_GLOTA	Uncharacterized protein. (86 aa)
	S7RHD5_GLOTA	WD40 repeat-like protein. (583 aa)
	S7RQV0_GLOTA	Krr1-domain-containing protein. (693 aa)
	S7RVB0_GLOTA	Uncharacterized protein. (281 aa)
	S7RXA3_GLOTA	Bystin-domain-containing protein. (450 aa)
	S7RXD4_GLOTA	Uncharacterized protein. (212 aa)
	S7S1Q8_GLOTA	Uncharacterized protein. (309 aa)
	S7S1R3_GLOTA	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (393 aa)
	S7S1R9_GLOTA	Uncharacterized protein. (1017 aa)

Your Current Organism:

Gloeophyllum trabeum

NCBI taxonomy Id: 670483
Other names: G. trabeum ATCC 11539, Gloeophyllum trabeum ATCC 11539

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
S7PVH5_GLOTA	S7PX10_GLOTA	S7PVH5	S7PX10	BING4CT-domain-containing protein.	CBF-domain-containing protein.	0.999
S7PVH5_GLOTA	S7Q4W8_GLOTA	S7PVH5	S7Q4W8	BING4CT-domain-containing protein.	Fcf1-domain-containing protein.	0.981
S7PVH5_GLOTA	S7QIN7_GLOTA	S7PVH5	S7QIN7	BING4CT-domain-containing protein.	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	0.827
S7PVH5_GLOTA	S7QIY6_GLOTA	S7PVH5	S7QIY6	BING4CT-domain-containing protein.	WD40 repeat-like protein.	0.998
S7PVH5_GLOTA	S7QLP6_GLOTA	S7PVH5	S7QLP6	BING4CT-domain-containing protein.	Uncharacterized protein.	0.553
S7PVH5_GLOTA	S7QPR9_GLOTA	S7PVH5	S7QPR9	BING4CT-domain-containing protein.	Uncharacterized protein.	0.999
S7PVH5_GLOTA	S7R9T9_GLOTA	S7PVH5	S7R9T9	BING4CT-domain-containing protein.	Fcf2-domain-containing protein.	0.986
S7PVH5_GLOTA	S7RHD5_GLOTA	S7PVH5	S7RHD5	BING4CT-domain-containing protein.	WD40 repeat-like protein.	0.998
S7PVH5_GLOTA	S7RQV0_GLOTA	S7PVH5	S7RQV0	BING4CT-domain-containing protein.	Krr1-domain-containing protein.	0.553
S7PVH5_GLOTA	S7RXA3_GLOTA	S7PVH5	S7RXA3	BING4CT-domain-containing protein.	Bystin-domain-containing protein.	0.998
S7PVH5_GLOTA	S7RXD4_GLOTA	S7PVH5	S7RXD4	BING4CT-domain-containing protein.	Uncharacterized protein.	0.963
S7PVH5_GLOTA	S7S1R3_GLOTA	S7PVH5	S7S1R3	BING4CT-domain-containing protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.999
S7PVH5_GLOTA	S7S1R9_GLOTA	S7PVH5	S7S1R9	BING4CT-domain-containing protein.	Uncharacterized protein.	0.998
S7PX10_GLOTA	S7PVH5_GLOTA	S7PX10	S7PVH5	CBF-domain-containing protein.	BING4CT-domain-containing protein.	0.999
S7PX10_GLOTA	S7PZ86_GLOTA	S7PX10	S7PZ86	CBF-domain-containing protein.	Uncharacterized protein.	0.468
S7PX10_GLOTA	S7Q4W8_GLOTA	S7PX10	S7Q4W8	CBF-domain-containing protein.	Fcf1-domain-containing protein.	0.961
S7PX10_GLOTA	S7QIN7_GLOTA	S7PX10	S7QIN7	CBF-domain-containing protein.	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	0.687
S7PX10_GLOTA	S7QIY6_GLOTA	S7PX10	S7QIY6	CBF-domain-containing protein.	WD40 repeat-like protein.	0.998
S7PX10_GLOTA	S7QLP6_GLOTA	S7PX10	S7QLP6	CBF-domain-containing protein.	Uncharacterized protein.	0.436
S7PX10_GLOTA	S7QPR9_GLOTA	S7PX10	S7QPR9	CBF-domain-containing protein.	Uncharacterized protein.	0.999