47 items (Gloeophyllum trabeum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	S7QML5_GLOTA	S1 motif domain-containing protein. (185 aa)
	S7S1R3_GLOTA	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (393 aa)
	S7S1R9_GLOTA	Uncharacterized protein. (1017 aa)
	S7S1Z5_GLOTA	Uncharacterized protein. (2057 aa)
	S7RZK4_GLOTA	RNase_PH domain-containing protein. (286 aa)
	S7RY01_GLOTA	Ribosomal protein S5 domain 2-like protein. (262 aa)
	S7RXD4_GLOTA	Uncharacterized protein. (212 aa)
	S7RXA4_GLOTA	Brix-domain-containing protein. (266 aa)
	S7RXA3_GLOTA	Bystin-domain-containing protein. (450 aa)
	S7RVF2_GLOTA	ATP-dependent RNA helicase DBP10. (948 aa)
	S7RVB0_GLOTA	Uncharacterized protein. (281 aa)
	S7RRJ0_GLOTA	TGF beta-inducible nuclear protein 1. (266 aa)
	S7RQV0_GLOTA	Krr1-domain-containing protein. (693 aa)
	S7RK45_GLOTA	HRDC domain-containing protein. (877 aa)
	S7RIU8_GLOTA	RNase_PH domain-containing protein. (267 aa)
	S7RHD5_GLOTA	WD40 repeat-like protein. (583 aa)
	S7REF5_GLOTA	Uncharacterized protein. (86 aa)
	S7RC22_GLOTA	Uncharacterized protein. (73 aa)
	S7R9T9_GLOTA	Fcf2-domain-containing protein. (326 aa)
	S7QPR9_GLOTA	Uncharacterized protein. (1479 aa)
	S7QPF7_GLOTA	DEAD-domain-containing protein; Belongs to the DEAD box helicase family. (563 aa)
	S7QNC8_GLOTA	Las1-domain-containing protein. (485 aa)
	NOP7	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (625 aa)
	S7S1Q8_GLOTA	Uncharacterized protein. (309 aa)
	SPB1	AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. (876 aa)
	S7QLP6_GLOTA	Uncharacterized protein. (347 aa)
	S7QLM8_GLOTA	Uncharacterized protein. (287 aa)
	S7QKK4_GLOTA	CLP1_P domain-containing protein. (773 aa)
	ERB1	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (716 aa)
	S7QIY6_GLOTA	WD40 repeat-like protein. (957 aa)
	S7QIN7_GLOTA	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (311 aa)
	S7QGU0_GLOTA	Exonuclease domain-containing protein. (308 aa)
	S7QFG4_GLOTA	DUF4477 domain-containing protein. (160 aa)
	S7QA46_GLOTA	Protein MAK16; Belongs to the MAK16 family. (322 aa)
	S7QA27_GLOTA	Brix-domain-containing protein. (381 aa)
	S7QA13_GLOTA	S1 domain-containing protein. (286 aa)
	S7Q8G5_GLOTA	Uncharacterized protein. (346 aa)
	S7Q7T4_GLOTA	RNB-domain-containing protein; Belongs to the RNR ribonuclease family. (992 aa)
	S7Q4W8_GLOTA	Fcf1-domain-containing protein. (194 aa)
	S7Q1T8_GLOTA	Exonuclease domain-containing protein. (616 aa)
	S7PZP7_GLOTA	Ribosomal protein S5 domain 2-like protein. (338 aa)
	S7PZG5_GLOTA	Ribosomal protein S5 domain 2-like protein. (296 aa)
	S7PZ86_GLOTA	Uncharacterized protein. (86 aa)
	S7PX10_GLOTA	CBF-domain-containing protein. (608 aa)
	S7PW26_GLOTA	RNase_PH domain-containing protein. (307 aa)
	S7PVH5_GLOTA	BING4CT-domain-containing protein. (616 aa)
	YTM1	Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (463 aa)

Your Current Organism:

Gloeophyllum trabeum

NCBI taxonomy Id: 670483
Other names: G. trabeum ATCC 11539, Gloeophyllum trabeum ATCC 11539

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ERB1	NOP7	S7QK06	S7QMZ8	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.999
ERB1	S7PVH5_GLOTA	S7QK06	S7PVH5	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	BING4CT-domain-containing protein.	0.915
ERB1	S7PX10_GLOTA	S7QK06	S7PX10	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	CBF-domain-containing protein.	0.726
ERB1	S7QA27_GLOTA	S7QK06	S7QA27	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Brix-domain-containing protein.	0.964
ERB1	S7QA46_GLOTA	S7QK06	S7QA46	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Protein MAK16; Belongs to the MAK16 family.	0.956
ERB1	S7QIN7_GLOTA	S7QK06	S7QIN7	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	0.707
ERB1	S7QIY6_GLOTA	S7QK06	S7QIY6	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	WD40 repeat-like protein.	0.947
ERB1	S7QKK4_GLOTA	S7QK06	S7QKK4	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	CLP1_P domain-containing protein.	0.798
ERB1	S7QLP6_GLOTA	S7QK06	S7QLP6	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.470
ERB1	S7QNC8_GLOTA	S7QK06	S7QNC8	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Las1-domain-containing protein.	0.760
ERB1	S7QPF7_GLOTA	S7QK06	S7QPF7	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	DEAD-domain-containing protein; Belongs to the DEAD box helicase family.	0.911
ERB1	S7QPR9_GLOTA	S7QK06	S7QPR9	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.925
ERB1	S7RHD5_GLOTA	S7QK06	S7RHD5	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	WD40 repeat-like protein.	0.726
ERB1	S7RQV0_GLOTA	S7QK06	S7RQV0	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Krr1-domain-containing protein.	0.470
ERB1	S7RRJ0_GLOTA	S7QK06	S7RRJ0	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	TGF beta-inducible nuclear protein 1.	0.987
ERB1	S7RVF2_GLOTA	S7QK06	S7RVF2	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	ATP-dependent RNA helicase DBP10.	0.964
ERB1	S7RXA3_GLOTA	S7QK06	S7RXA3	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Bystin-domain-containing protein.	0.920
ERB1	S7RXA4_GLOTA	S7QK06	S7RXA4	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Brix-domain-containing protein.	0.993
ERB1	S7RXD4_GLOTA	S7QK06	S7RXD4	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.578
ERB1	S7S1R3_GLOTA	S7QK06	S7S1R3	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.499