37 items (Gloeophyllum trabeum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	S7QNC8_GLOTA	Las1-domain-containing protein. (485 aa)
	S7PSD5_GLOTA	Brix-domain-containing protein. (325 aa)
	S7PSG4_GLOTA	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (455 aa)
	YTM1	Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (463 aa)
	S7PV84_GLOTA	Uncharacterized protein. (924 aa)
	S7PVX0_GLOTA	L30e-like protein. (271 aa)
	S7PZZ8_GLOTA	RRM domain-containing protein. (468 aa)
	S7Q0A8_GLOTA	P-loop containing nucleoside triphosphate hydrolase protein. (466 aa)
	S7Q0N7_GLOTA	Trm112p-domain-containing protein. (123 aa)
	S7Q5M3_GLOTA	Ribosomal protein L1. (309 aa)
	S7QA27_GLOTA	Brix-domain-containing protein. (381 aa)
	S7QA46_GLOTA	Protein MAK16; Belongs to the MAK16 family. (322 aa)
	S7QB26_GLOTA	HIT-type domain-containing protein. (225 aa)
	S7QBC2_GLOTA	Uncharacterized protein. (360 aa)
	S7QFT5_GLOTA	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (707 aa)
	MED16	Mediator of RNA polymerase II transcription subunit 16; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (959 aa)
	S7QHV1_GLOTA	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family. (220 aa)
	S7QIR4_GLOTA	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (160 aa)
	S7QK01_GLOTA	Uncharacterized protein. (611 aa)
	ERB1	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (716 aa)
	S7QKK4_GLOTA	CLP1_P domain-containing protein. (773 aa)
	SPB1	AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. (876 aa)
	S7QMF1_GLOTA	Uncharacterized protein. (244 aa)
	S7QMK0_GLOTA	Uncharacterized protein. (464 aa)
	NOP7	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (625 aa)
	S7QN57_GLOTA	RNA helicase. (523 aa)
	S7QPF7_GLOTA	DEAD-domain-containing protein; Belongs to the DEAD box helicase family. (563 aa)
	S7QPR9_GLOTA	Uncharacterized protein. (1479 aa)
	S7RM67_GLOTA	RNA helicase. (615 aa)
	S7RRJ0_GLOTA	TGF beta-inducible nuclear protein 1. (266 aa)
	S7RTN8_GLOTA	60S ribosomal protein L7. (250 aa)
	S7RVF2_GLOTA	ATP-dependent RNA helicase DBP10. (948 aa)
	S7RWW7_GLOTA	Uncharacterized protein. (324 aa)
	S7RXA4_GLOTA	Brix-domain-containing protein. (266 aa)
	S7RXE2_GLOTA	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (126 aa)
	S7S0I6_GLOTA	Ribosomal protein L29. (124 aa)
	S7S1Z5_GLOTA	Uncharacterized protein. (2057 aa)

Your Current Organism:

Gloeophyllum trabeum

NCBI taxonomy Id: 670483
Other names: G. trabeum ATCC 11539, Gloeophyllum trabeum ATCC 11539

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ERB1	MED16	S7QK06	S7QGL1	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Mediator of RNA polymerase II transcription subunit 16; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.952
ERB1	NOP7	S7QK06	S7QMZ8	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.999
ERB1	S7PSD5_GLOTA	S7QK06	S7PSD5	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Brix-domain-containing protein.	0.990
ERB1	S7PSG4_GLOTA	S7QK06	S7PSG4	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family.	0.684
ERB1	S7PV84_GLOTA	S7QK06	S7PV84	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.881
ERB1	S7PVX0_GLOTA	S7QK06	S7PVX0	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	L30e-like protein.	0.931
ERB1	S7PZZ8_GLOTA	S7QK06	S7PZZ8	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	RRM domain-containing protein.	0.986
ERB1	S7Q0A8_GLOTA	S7QK06	S7Q0A8	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	P-loop containing nucleoside triphosphate hydrolase protein.	0.989
ERB1	S7Q5M3_GLOTA	S7QK06	S7Q5M3	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Ribosomal protein L1.	0.992
ERB1	S7QA27_GLOTA	S7QK06	S7QA27	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Brix-domain-containing protein.	0.964
ERB1	S7QA46_GLOTA	S7QK06	S7QA46	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Protein MAK16; Belongs to the MAK16 family.	0.956
ERB1	S7QFT5_GLOTA	S7QK06	S7QFT5	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.996
ERB1	S7QHV1_GLOTA	S7QK06	S7QHV1	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.	0.527
ERB1	S7QIR4_GLOTA	S7QK06	S7QIR4	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.836
ERB1	S7QK01_GLOTA	S7QK06	S7QK01	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.989
ERB1	S7QKK4_GLOTA	S7QK06	S7QKK4	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	CLP1_P domain-containing protein.	0.798
ERB1	S7QMF1_GLOTA	S7QK06	S7QMF1	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.817
ERB1	S7QMK0_GLOTA	S7QK06	S7QMK0	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.874
ERB1	S7QN57_GLOTA	S7QK06	S7QN57	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	RNA helicase.	0.999
ERB1	S7QNC8_GLOTA	S7QK06	S7QNC8	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Las1-domain-containing protein.	0.760