13 items (Gloeophyllum trabeum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	S7RFP6_GLOTA	Phospholipase. (842 aa)
	S7PTK3_GLOTA	Arginase/deacetylase. (646 aa)
	S7PTW1_GLOTA	Uncharacterized protein. (258 aa)
	S7Q0X4_GLOTA	Chitin deacetylase Cda1. (334 aa)
	S7R9V7_GLOTA	Phospholipase. (1236 aa)
	S7Q295_GLOTA	26S proteasome regulatory subunit RPN1; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins. (953 aa)
	S7Q647_GLOTA	Uncharacterized protein. (1034 aa)
	S7Q9H0_GLOTA	NodB homology domain-containing protein. (487 aa)
	S7QM36_GLOTA	Sec3-PIP2_bind domain-containing protein. (908 aa)
	S7QM78_GLOTA	Cell division control/GTP binding protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family. (446 aa)
	S7QNZ1_GLOTA	Glycoside hydrolase/deacetylase. (486 aa)
	S7PQE8_GLOTA	GTP binding protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family. (322 aa)
	S7RZY8_GLOTA	Pex24p domain-containing protein. (460 aa)

Your Current Organism:

Gloeophyllum trabeum

NCBI taxonomy Id: 670483
Other names: G. trabeum ATCC 11539, Gloeophyllum trabeum ATCC 11539

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
S7PQE8_GLOTA	S7QM78_GLOTA	S7PQE8	S7QM78	GTP binding protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	Cell division control/GTP binding protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	0.929
S7Q647_GLOTA	S7RZY8_GLOTA	S7Q647	S7RZY8	Uncharacterized protein.	Pex24p domain-containing protein.	0.454
S7QM78_GLOTA	S7PQE8_GLOTA	S7QM78	S7PQE8	Cell division control/GTP binding protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	GTP binding protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	0.929
S7R9V7_GLOTA	S7RFP6_GLOTA	S7R9V7	S7RFP6	Phospholipase.	Phospholipase.	0.906
S7RFP6_GLOTA	S7R9V7_GLOTA	S7RFP6	S7R9V7	Phospholipase.	Phospholipase.	0.906
S7RZY8_GLOTA	S7Q647_GLOTA	S7RZY8	S7Q647	Pex24p domain-containing protein.	Uncharacterized protein.	0.454