34 items (Gloeophyllum trabeum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	S7QIK4_GLOTA	Uncharacterized protein. (500 aa)
	S7QJ12_GLOTA	P-loop containing nucleoside triphosphate hydrolase protein. (1067 aa)
	S7QM66_GLOTA	Matrin-type domain-containing protein. (221 aa)
	S7QN67_GLOTA	Small nuclear ribonucleoprotein Sm D2. (111 aa)
	S7QP05_GLOTA	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (87 aa)
	S7RCX4_GLOTA	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (116 aa)
	S7RIV3_GLOTA	RNA-binding domain-containing protein. (391 aa)
	S7RMY9_GLOTA	U6 snRNA-associated Sm-like protein LSm7. (123 aa)
	S7RPE7_GLOTA	Sm-like ribonucleo protein. (167 aa)
	S7RPL6_GLOTA	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (459 aa)
	S7RPP1_GLOTA	Uncharacterized protein. (624 aa)
	S7RPX4_GLOTA	Uncharacterized protein. (354 aa)
	S7RQX0_GLOTA	GH16 domain-containing protein. (324 aa)
	S7RR74_GLOTA	Laminarinase. (314 aa)
	S7RTH2_GLOTA	Laminarinase. (317 aa)
	S7RTP1_GLOTA	ARM repeat-containing protein. (1144 aa)
	S7RU96_GLOTA	Uncharacterized protein. (578 aa)
	S7RUD0_GLOTA	Uncharacterized protein. (811 aa)
	S7RVY6_GLOTA	RNA-binding domain-containing protein. (253 aa)
	S7RY61_GLOTA	LUC7-domain-containing protein. (318 aa)
	S7RYH0_GLOTA	Uncharacterized protein. (773 aa)
	S7S050_GLOTA	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (215 aa)
	S7S1E2_GLOTA	Uncharacterized protein. (489 aa)
	S7S0V2_GLOTA	Small nuclear ribonucleoprotein G. (77 aa)
	S7PSD8_GLOTA	Uncharacterized protein. (730 aa)
	S7PY79_GLOTA	Uncharacterized protein. (376 aa)
	S7Q004_GLOTA	GH16 domain-containing protein. (376 aa)
	S7Q0D9_GLOTA	Endo-beta-glucanase. (318 aa)
	S7Q1N2_GLOTA	GH16 domain-containing protein. (385 aa)
	S7Q5T8_GLOTA	Endo-beta-glucanase. (317 aa)
	S7Q784_GLOTA	Uncharacterized protein. (161 aa)
	S7QD92_GLOTA	DUF382-domain-containing protein. (582 aa)
	S7QGL7_GLOTA	Uncharacterized protein. (1171 aa)
	S7QHC6_GLOTA	Uncharacterized protein. (321 aa)

Your Current Organism:

Gloeophyllum trabeum

NCBI taxonomy Id: 670483
Other names: G. trabeum ATCC 11539, Gloeophyllum trabeum ATCC 11539

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
S7PSD8_GLOTA	S7QD92_GLOTA	S7PSD8	S7QD92	Uncharacterized protein.	DUF382-domain-containing protein.	0.948
S7PSD8_GLOTA	S7QHC6_GLOTA	S7PSD8	S7QHC6	Uncharacterized protein.	Uncharacterized protein.	0.882
S7PSD8_GLOTA	S7QIK4_GLOTA	S7PSD8	S7QIK4	Uncharacterized protein.	Uncharacterized protein.	0.917
S7PSD8_GLOTA	S7QJ12_GLOTA	S7PSD8	S7QJ12	Uncharacterized protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.628
S7PSD8_GLOTA	S7QM66_GLOTA	S7PSD8	S7QM66	Uncharacterized protein.	Matrin-type domain-containing protein.	0.904
S7PSD8_GLOTA	S7QN67_GLOTA	S7PSD8	S7QN67	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D2.	0.990
S7PSD8_GLOTA	S7QP05_GLOTA	S7PSD8	S7QP05	Uncharacterized protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.989
S7PSD8_GLOTA	S7RCX4_GLOTA	S7PSD8	S7RCX4	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.990
S7PSD8_GLOTA	S7RMY9_GLOTA	S7PSD8	S7RMY9	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm7.	0.940
S7PSD8_GLOTA	S7RPE7_GLOTA	S7PSD8	S7RPE7	Uncharacterized protein.	Sm-like ribonucleo protein.	0.989
S7PSD8_GLOTA	S7RPL6_GLOTA	S7PSD8	S7RPL6	Uncharacterized protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.717
S7PSD8_GLOTA	S7RTP1_GLOTA	S7PSD8	S7RTP1	Uncharacterized protein.	ARM repeat-containing protein.	0.992
S7PSD8_GLOTA	S7RVY6_GLOTA	S7PSD8	S7RVY6	Uncharacterized protein.	RNA-binding domain-containing protein.	0.870
S7PSD8_GLOTA	S7RYH0_GLOTA	S7PSD8	S7RYH0	Uncharacterized protein.	Uncharacterized protein.	0.925
S7PSD8_GLOTA	S7S0V2_GLOTA	S7PSD8	S7S0V2	Uncharacterized protein.	Small nuclear ribonucleoprotein G.	0.975
S7PSD8_GLOTA	S7S1E2_GLOTA	S7PSD8	S7S1E2	Uncharacterized protein.	Uncharacterized protein.	0.857
S7PY79_GLOTA	S7QD92_GLOTA	S7PY79	S7QD92	Uncharacterized protein.	DUF382-domain-containing protein.	0.529
S7PY79_GLOTA	S7QHC6_GLOTA	S7PY79	S7QHC6	Uncharacterized protein.	Uncharacterized protein.	0.550
S7PY79_GLOTA	S7QN67_GLOTA	S7PY79	S7QN67	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D2.	0.618
S7PY79_GLOTA	S7QP05_GLOTA	S7PY79	S7QP05	Uncharacterized protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.606