30 items (Gloeophyllum trabeum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	S7PZ61_GLOTA	Uncharacterized protein. (460 aa)
	S7QKS1_GLOTA	Nup96 domain-containing protein. (895 aa)
	S7QIB7_GLOTA	Peptidase S59 domain-containing protein. (988 aa)
	S7QIA0_GLOTA	Uncharacterized protein. (1227 aa)
	S7QI59_GLOTA	Argonaute-like protein. (899 aa)
	S7QHR1_GLOTA	Uncharacterized protein. (848 aa)
	S7QG68_GLOTA	Nup188_C domain-containing protein. (2047 aa)
	S7QEM5_GLOTA	Uncharacterized protein. (1165 aa)
	S7QCS9_GLOTA	RanBD1 domain-containing protein. (675 aa)
	S7Q6U9_GLOTA	Uncharacterized protein. (2117 aa)
	S7Q465_GLOTA	Uncharacterized protein. (1926 aa)
	S7Q3Z3_GLOTA	WD40 repeat-like protein. (352 aa)
	S7Q3Q2_GLOTA	WD40 repeat-like protein. (353 aa)
	S7PZL8_GLOTA	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (775 aa)
	S7QM04_GLOTA	Nucleoporin. (1355 aa)
	S7PXY6_GLOTA	Histone H2B; Belongs to the histone H2B family. (147 aa)
	S7PWF5_GLOTA	WD40 repeat-like protein. (403 aa)
	S7PWE1_GLOTA	Uncharacterized protein. (699 aa)
	S7PW75_GLOTA	Argonaute-like protein. (992 aa)
	S7S1B1_GLOTA	Uncharacterized protein. (1365 aa)
	S7RYA4_GLOTA	RanBD1 domain-containing protein. (207 aa)
	S7RY06_GLOTA	Histone H2B; Belongs to the histone H2B family. (156 aa)
	S7RWQ0_GLOTA	Nsp1_C domain-containing protein. (609 aa)
	S7RU71_GLOTA	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (723 aa)
	S7RJU2_GLOTA	ARM repeat-containing protein. (1040 aa)
	S7RHE0_GLOTA	WD40 repeat-like protein; Belongs to the WD repeat SEC13 family. (415 aa)
	S7RGG6_GLOTA	Argonaute-like protein; Belongs to the argonaute family. (980 aa)
	S7RF28_GLOTA	TPR_MLP1_2 domain-containing protein. (1946 aa)
	S7REA0_GLOTA	Nup54 domain-containing protein. (625 aa)
	S7QNQ7_GLOTA	Nuclear pore protein. (865 aa)

Your Current Organism:

Gloeophyllum trabeum

NCBI taxonomy Id: 670483
Other names: G. trabeum ATCC 11539, Gloeophyllum trabeum ATCC 11539

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
S7PW75_GLOTA	S7QNQ7_GLOTA	S7PW75	S7QNQ7	Argonaute-like protein.	Nuclear pore protein.	0.459
S7PW75_GLOTA	S7RJU2_GLOTA	S7PW75	S7RJU2	Argonaute-like protein.	ARM repeat-containing protein.	0.640
S7PW75_GLOTA	S7RU71_GLOTA	S7PW75	S7RU71	Argonaute-like protein.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.448
S7PWE1_GLOTA	S7PZ61_GLOTA	S7PWE1	S7PZ61	Uncharacterized protein.	Uncharacterized protein.	0.453
S7PWE1_GLOTA	S7PZL8_GLOTA	S7PWE1	S7PZL8	Uncharacterized protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.899
S7PWE1_GLOTA	S7Q465_GLOTA	S7PWE1	S7Q465	Uncharacterized protein.	Uncharacterized protein.	0.899
S7PWE1_GLOTA	S7Q6U9_GLOTA	S7PWE1	S7Q6U9	Uncharacterized protein.	Uncharacterized protein.	0.959
S7PWE1_GLOTA	S7QEM5_GLOTA	S7PWE1	S7QEM5	Uncharacterized protein.	Uncharacterized protein.	0.851
S7PWE1_GLOTA	S7QG68_GLOTA	S7PWE1	S7QG68	Uncharacterized protein.	Nup188_C domain-containing protein.	0.932
S7PWE1_GLOTA	S7QIA0_GLOTA	S7PWE1	S7QIA0	Uncharacterized protein.	Uncharacterized protein.	0.709
S7PWE1_GLOTA	S7QIB7_GLOTA	S7PWE1	S7QIB7	Uncharacterized protein.	Peptidase S59 domain-containing protein.	0.709
S7PWE1_GLOTA	S7QKS1_GLOTA	S7PWE1	S7QKS1	Uncharacterized protein.	Nup96 domain-containing protein.	0.709
S7PWE1_GLOTA	S7QM04_GLOTA	S7PWE1	S7QM04	Uncharacterized protein.	Nucleoporin.	0.966
S7PWE1_GLOTA	S7QNQ7_GLOTA	S7PWE1	S7QNQ7	Uncharacterized protein.	Nuclear pore protein.	0.984
S7PWE1_GLOTA	S7REA0_GLOTA	S7PWE1	S7REA0	Uncharacterized protein.	Nup54 domain-containing protein.	0.906
S7PWE1_GLOTA	S7RHE0_GLOTA	S7PWE1	S7RHE0	Uncharacterized protein.	WD40 repeat-like protein; Belongs to the WD repeat SEC13 family.	0.965
S7PWE1_GLOTA	S7RU71_GLOTA	S7PWE1	S7RU71	Uncharacterized protein.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.931
S7PWE1_GLOTA	S7RWQ0_GLOTA	S7PWE1	S7RWQ0	Uncharacterized protein.	Nsp1_C domain-containing protein.	0.859
S7PWE1_GLOTA	S7RYA4_GLOTA	S7PWE1	S7RYA4	Uncharacterized protein.	RanBD1 domain-containing protein.	0.609
S7PWE1_GLOTA	S7S1B1_GLOTA	S7PWE1	S7S1B1	Uncharacterized protein.	Uncharacterized protein.	0.836