10 items (Gloeophyllum trabeum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	S7QDA4_GLOTA	Kinase-like protein. (532 aa)
	S7RSC6_GLOTA	Kinase-like protein. (301 aa)
	S7S325_GLOTA	Chromatin modification-related protein. (455 aa)
	S7QLQ4_GLOTA	F-box domain-containing protein. (229 aa)
	S7RA25_GLOTA	Kinase; Belongs to the protein kinase superfamily. (382 aa)
	S7PXV7_GLOTA	SAICAR synthase-like protein. (439 aa)
	S7PYC5_GLOTA	Uncharacterized protein. (94 aa)
	S7Q658_GLOTA	Kinase-like protein; Belongs to the protein kinase superfamily. (304 aa)
	S7RVW9_GLOTA	Uncharacterized protein. (327 aa)
	S7QL36_GLOTA	Peptidyl-prolyl cis-trans isomerase. (171 aa)

Your Current Organism:

Gloeophyllum trabeum

NCBI taxonomy Id: 670483
Other names: G. trabeum ATCC 11539, Gloeophyllum trabeum ATCC 11539

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
S7PXV7_GLOTA	S7QL36_GLOTA	S7PXV7	S7QL36	SAICAR synthase-like protein.	Peptidyl-prolyl cis-trans isomerase.	0.621
S7PYC5_GLOTA	S7QL36_GLOTA	S7PYC5	S7QL36	Uncharacterized protein.	Peptidyl-prolyl cis-trans isomerase.	0.621
S7Q658_GLOTA	S7RA25_GLOTA	S7Q658	S7RA25	Kinase-like protein; Belongs to the protein kinase superfamily.	Kinase; Belongs to the protein kinase superfamily.	0.451
S7Q658_GLOTA	S7RSC6_GLOTA	S7Q658	S7RSC6	Kinase-like protein; Belongs to the protein kinase superfamily.	Kinase-like protein.	0.901
S7QDA4_GLOTA	S7RA25_GLOTA	S7QDA4	S7RA25	Kinase-like protein.	Kinase; Belongs to the protein kinase superfamily.	0.694
S7QL36_GLOTA	S7PXV7_GLOTA	S7QL36	S7PXV7	Peptidyl-prolyl cis-trans isomerase.	SAICAR synthase-like protein.	0.621
S7QL36_GLOTA	S7PYC5_GLOTA	S7QL36	S7PYC5	Peptidyl-prolyl cis-trans isomerase.	Uncharacterized protein.	0.621
S7RA25_GLOTA	S7Q658_GLOTA	S7RA25	S7Q658	Kinase; Belongs to the protein kinase superfamily.	Kinase-like protein; Belongs to the protein kinase superfamily.	0.451
S7RA25_GLOTA	S7QDA4_GLOTA	S7RA25	S7QDA4	Kinase; Belongs to the protein kinase superfamily.	Kinase-like protein.	0.694
S7RA25_GLOTA	S7RSC6_GLOTA	S7RA25	S7RSC6	Kinase; Belongs to the protein kinase superfamily.	Kinase-like protein.	0.450
S7RSC6_GLOTA	S7Q658_GLOTA	S7RSC6	S7Q658	Kinase-like protein.	Kinase-like protein; Belongs to the protein kinase superfamily.	0.901
S7RSC6_GLOTA	S7RA25_GLOTA	S7RSC6	S7RA25	Kinase-like protein.	Kinase; Belongs to the protein kinase superfamily.	0.450