19 items (Gloeophyllum trabeum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	S7RZ97_GLOTA	Uncharacterized protein. (1120 aa)
	S7S3V9_GLOTA	Uncharacterized protein. (1291 aa)
	S7RY06_GLOTA	Histone H2B; Belongs to the histone H2B family. (156 aa)
	S7QAB5_GLOTA	Uncharacterized protein. (537 aa)
	S7Q7V3_GLOTA	Uncharacterized protein. (1456 aa)
	S7Q6R8_GLOTA	P-loop containing nucleoside triphosphate hydrolase protein. (826 aa)
	S7Q0Y5_GLOTA	Uncharacterized protein. (1381 aa)
	S7Q082_GLOTA	Uncharacterized protein. (691 aa)
	S7PXY6_GLOTA	Histone H2B; Belongs to the histone H2B family. (147 aa)
	S7PWJ8_GLOTA	Plus-3-domain-containing protein. (532 aa)
	S7RUD0_GLOTA	Uncharacterized protein. (811 aa)
	S7RT35_GLOTA	Ubiquitin-domain-containing protein. (159 aa)
	S7RSG0_GLOTA	Ubiquitin. (381 aa)
	S7RRT1_GLOTA	Uncharacterized protein. (982 aa)
	S7RDB5_GLOTA	Uncharacterized protein. (368 aa)
	S7QMQ7_GLOTA	Polyubiquitin. (457 aa)
	S7QEN3_GLOTA	Helicase C-terminal domain-containing protein. (1250 aa)
	S7QBD8_GLOTA	Yip1-domain-containing protein. (260 aa)
	S7PWE9_GLOTA	Uncharacterized protein. (821 aa)

Your Current Organism:

Gloeophyllum trabeum

NCBI taxonomy Id: 670483
Other names: G. trabeum ATCC 11539, Gloeophyllum trabeum ATCC 11539

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
S7PWE9_GLOTA	S7QAB5_GLOTA	S7PWE9	S7QAB5	Uncharacterized protein.	Uncharacterized protein.	0.480
S7PWJ8_GLOTA	S7PXY6_GLOTA	S7PWJ8	S7PXY6	Plus-3-domain-containing protein.	Histone H2B; Belongs to the histone H2B family.	0.777
S7PWJ8_GLOTA	S7QAB5_GLOTA	S7PWJ8	S7QAB5	Plus-3-domain-containing protein.	Uncharacterized protein.	0.999
S7PWJ8_GLOTA	S7RDB5_GLOTA	S7PWJ8	S7RDB5	Plus-3-domain-containing protein.	Uncharacterized protein.	0.946
S7PWJ8_GLOTA	S7RY06_GLOTA	S7PWJ8	S7RY06	Plus-3-domain-containing protein.	Histone H2B; Belongs to the histone H2B family.	0.777
S7PXY6_GLOTA	S7PWJ8_GLOTA	S7PXY6	S7PWJ8	Histone H2B; Belongs to the histone H2B family.	Plus-3-domain-containing protein.	0.777
S7PXY6_GLOTA	S7QAB5_GLOTA	S7PXY6	S7QAB5	Histone H2B; Belongs to the histone H2B family.	Uncharacterized protein.	0.992
S7PXY6_GLOTA	S7QMQ7_GLOTA	S7PXY6	S7QMQ7	Histone H2B; Belongs to the histone H2B family.	Polyubiquitin.	0.644
S7PXY6_GLOTA	S7RDB5_GLOTA	S7PXY6	S7RDB5	Histone H2B; Belongs to the histone H2B family.	Uncharacterized protein.	0.750
S7PXY6_GLOTA	S7RSG0_GLOTA	S7PXY6	S7RSG0	Histone H2B; Belongs to the histone H2B family.	Ubiquitin.	0.644
S7PXY6_GLOTA	S7RT35_GLOTA	S7PXY6	S7RT35	Histone H2B; Belongs to the histone H2B family.	Ubiquitin-domain-containing protein.	0.788
S7Q082_GLOTA	S7QAB5_GLOTA	S7Q082	S7QAB5	Uncharacterized protein.	Uncharacterized protein.	0.480
S7Q0Y5_GLOTA	S7QAB5_GLOTA	S7Q0Y5	S7QAB5	Uncharacterized protein.	Uncharacterized protein.	0.480
S7Q6R8_GLOTA	S7QAB5_GLOTA	S7Q6R8	S7QAB5	P-loop containing nucleoside triphosphate hydrolase protein.	Uncharacterized protein.	0.480
S7Q7V3_GLOTA	S7QAB5_GLOTA	S7Q7V3	S7QAB5	Uncharacterized protein.	Uncharacterized protein.	0.480
S7Q7V3_GLOTA	S7QMQ7_GLOTA	S7Q7V3	S7QMQ7	Uncharacterized protein.	Polyubiquitin.	0.532
S7Q7V3_GLOTA	S7RSG0_GLOTA	S7Q7V3	S7RSG0	Uncharacterized protein.	Ubiquitin.	0.532
S7Q7V3_GLOTA	S7RT35_GLOTA	S7Q7V3	S7RT35	Uncharacterized protein.	Ubiquitin-domain-containing protein.	0.651
S7QAB5_GLOTA	S7PWE9_GLOTA	S7QAB5	S7PWE9	Uncharacterized protein.	Uncharacterized protein.	0.480
S7QAB5_GLOTA	S7PWJ8_GLOTA	S7QAB5	S7PWJ8	Uncharacterized protein.	Plus-3-domain-containing protein.	0.999