31 items (Gloeophyllum trabeum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	S7QA26_GLOTA	Uncharacterized protein. (170 aa)
	S7QAX4_GLOTA	Transcription factor IIA, alpha/beta subunit. (305 aa)
	S7S5X3_GLOTA	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1218 aa)
	S7S137_GLOTA	BTB domain-containing protein. (829 aa)
	S7RZF0_GLOTA	RNA polymerase Rpb6. (113 aa)
	S7RY06_GLOTA	Histone H2B; Belongs to the histone H2B family. (156 aa)
	S7RXH8_GLOTA	Uncharacterized protein. (638 aa)
	S7RWI6_GLOTA	Uncharacterized protein. (859 aa)
	S7RW72_GLOTA	Insert subdomain of RNA polymerase alpha subunit. (287 aa)
	S7RTX0_GLOTA	Cyclin-like protein; Belongs to the cyclin family. (282 aa)
	S7RRQ8_GLOTA	Histone acetyltransferase GCN5. (365 aa)
	S7RQ41_GLOTA	Iron transporter biosynthesis regulating transcription factor. (104 aa)
	S7RLU2_GLOTA	Pkinase-domain-containing protein. (947 aa)
	S7RH46_GLOTA	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (113 aa)
	S7RES5_GLOTA	RPB5 subunit of DNA-directed RNA polymerase. (208 aa)
	S7RE64_GLOTA	Uncharacterized protein. (325 aa)
	S7RCT4_GLOTA	Rhodanese domain-containing protein. (333 aa)
	S7QNN1_GLOTA	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1674 aa)
	S7QMR3_GLOTA	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (157 aa)
	S7QK37_GLOTA	Uncharacterized protein. (71 aa)
	S7QJ41_GLOTA	Fork-head domain-containing protein. (305 aa)
	S7QFF8_GLOTA	TBP-domain-containing protein. (310 aa)
	S7QE58_GLOTA	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (546 aa)
	S7QB43_GLOTA	RPOL4c domain-containing protein. (134 aa)
	S7QAZ8_GLOTA	Fork-head domain-containing protein. (860 aa)
	S7PW64_GLOTA	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (128 aa)
	S7PWV8_GLOTA	RBP11-like subunits of RNA polymerase. (143 aa)
	S7PXW1_GLOTA	Uncharacterized protein. (74 aa)
	S7PXY6_GLOTA	Histone H2B; Belongs to the histone H2B family. (147 aa)
	S7Q3J2_GLOTA	DEAD-domain-containing protein; Belongs to the DEAD box helicase family. (496 aa)
	S7Q9G8_GLOTA	Uncharacterized protein. (746 aa)

Your Current Organism:

Gloeophyllum trabeum

NCBI taxonomy Id: 670483
Other names: G. trabeum ATCC 11539, Gloeophyllum trabeum ATCC 11539

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
S7PW64_GLOTA	S7PWV8_GLOTA	S7PW64	S7PWV8	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	RBP11-like subunits of RNA polymerase.	0.999
S7PW64_GLOTA	S7PXW1_GLOTA	S7PW64	S7PXW1	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Uncharacterized protein.	0.999
S7PW64_GLOTA	S7PXY6_GLOTA	S7PW64	S7PXY6	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Histone H2B; Belongs to the histone H2B family.	0.700
S7PW64_GLOTA	S7QA26_GLOTA	S7PW64	S7QA26	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Uncharacterized protein.	0.999
S7PW64_GLOTA	S7QAX4_GLOTA	S7PW64	S7QAX4	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Transcription factor IIA, alpha/beta subunit.	0.954
S7PW64_GLOTA	S7QB43_GLOTA	S7PW64	S7QB43	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	RPOL4c domain-containing protein.	0.999
S7PW64_GLOTA	S7QFF8_GLOTA	S7PW64	S7QFF8	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	TBP-domain-containing protein.	0.969
S7PW64_GLOTA	S7QK37_GLOTA	S7PW64	S7QK37	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Uncharacterized protein.	0.999
S7PW64_GLOTA	S7QMR3_GLOTA	S7PW64	S7QMR3	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
S7PW64_GLOTA	S7QNN1_GLOTA	S7PW64	S7QNN1	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
S7PW64_GLOTA	S7RE64_GLOTA	S7PW64	S7RE64	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Uncharacterized protein.	0.990
S7PW64_GLOTA	S7RES5_GLOTA	S7PW64	S7RES5	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	RPB5 subunit of DNA-directed RNA polymerase.	0.999
S7PW64_GLOTA	S7RH46_GLOTA	S7PW64	S7RH46	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.961
S7PW64_GLOTA	S7RLU2_GLOTA	S7PW64	S7RLU2	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Pkinase-domain-containing protein.	0.614
S7PW64_GLOTA	S7RTX0_GLOTA	S7PW64	S7RTX0	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Cyclin-like protein; Belongs to the cyclin family.	0.654
S7PW64_GLOTA	S7RW72_GLOTA	S7PW64	S7RW72	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Insert subdomain of RNA polymerase alpha subunit.	0.999
S7PW64_GLOTA	S7RWI6_GLOTA	S7PW64	S7RWI6	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Uncharacterized protein.	0.998
S7PW64_GLOTA	S7RY06_GLOTA	S7PW64	S7RY06	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Histone H2B; Belongs to the histone H2B family.	0.700
S7PW64_GLOTA	S7RZF0_GLOTA	S7PW64	S7RZF0	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	RNA polymerase Rpb6.	0.999
S7PW64_GLOTA	S7S137_GLOTA	S7PW64	S7S137	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	BTB domain-containing protein.	0.896