76 items (Gloeophyllum trabeum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	S7S2Y7_GLOTA	RNA-binding domain-containing protein. (258 aa)
	S7PXP4_GLOTA	RNA-binding domain-containing protein. (554 aa)
	S7PXS0_GLOTA	RRM domain-containing protein. (231 aa)
	S7PXT2_GLOTA	RNA-binding domain-containing protein. (212 aa)
	S7PY09_GLOTA	Uncharacterized protein. (374 aa)
	S7PZZ8_GLOTA	RRM domain-containing protein. (468 aa)
	S7Q0J0_GLOTA	RING-type domain-containing protein. (694 aa)
	S7Q0T6_GLOTA	Uncharacterized protein. (1072 aa)
	TIF35	Eukaryotic translation initiation factor 3 subunit G; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. This subunit can bind 18S rRNA. (295 aa)
	S7Q201_GLOTA	RING-type domain-containing protein. (715 aa)
	S7Q4W3_GLOTA	RRM domain-containing protein. (274 aa)
	S7Q595_GLOTA	Uncharacterized protein. (939 aa)
	S7Q5D8_GLOTA	RRM domain-containing protein. (263 aa)
	S7Q5I2_GLOTA	Uncharacterized protein. (679 aa)
	S7Q6C4_GLOTA	Uncharacterized protein. (780 aa)
	S7Q6G3_GLOTA	RRM domain-containing protein. (214 aa)
	S7Q7N1_GLOTA	Uncharacterized protein. (500 aa)
	S7Q9Q9_GLOTA	RRM domain-containing protein. (412 aa)
	S7QBM3_GLOTA	RRM domain-containing protein. (593 aa)
	S7QDI2_GLOTA	Uncharacterized protein. (714 aa)
	S7QDJ2_GLOTA	RRM domain-containing protein. (418 aa)
	S7QDS0_GLOTA	RNA-binding domain-containing protein. (161 aa)
	S7QE04_GLOTA	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (685 aa)
	S7QF19_GLOTA	Uncharacterized protein. (1289 aa)
	S7QF26_GLOTA	Uncharacterized protein. (284 aa)
	S7QHC6_GLOTA	Uncharacterized protein. (321 aa)
	S7QHJ9_GLOTA	Uncharacterized protein. (321 aa)
	S7QHR7_GLOTA	RRM domain-containing protein. (131 aa)
	S7QHU7_GLOTA	Nuclear cap-binding protein subunit 2. (226 aa)
	S7QHY8_GLOTA	RRM domain-containing protein. (257 aa)
	S7QJ56_GLOTA	RNA-binding domain-containing protein. (288 aa)
	S7QJ96_GLOTA	RRM domain-containing protein. (699 aa)
	S7QJ99_GLOTA	RNA-binding domain-containing protein. (215 aa)
	S7QJG6_GLOTA	RNA-binding domain-containing protein. (172 aa)
	S7QL83_GLOTA	RNA-binding domain-containing protein. (277 aa)
	S7QLR1_GLOTA	Uncharacterized protein. (1040 aa)
	S7QM79_GLOTA	Splicing factor, CC1-like protein. (483 aa)
	S7QMY0_GLOTA	Uncharacterized protein. (811 aa)
	S7QP64_GLOTA	Uncharacterized protein. (506 aa)
	S7RD05_GLOTA	Uncharacterized protein. (260 aa)
	S7RDA6_GLOTA	RRM domain-containing protein. (230 aa)
	S7RDJ6_GLOTA	RRM domain-containing protein. (194 aa)
	S7RHX8_GLOTA	Uncharacterized protein. (786 aa)
	S7RIA0_GLOTA	RRM domain-containing protein. (360 aa)
	S7RII5_GLOTA	Uncharacterized protein. (503 aa)
	S7RIV3_GLOTA	RNA-binding domain-containing protein. (391 aa)
	S7RNN5_GLOTA	RRM domain-containing protein. (463 aa)
	S7RPL6_GLOTA	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (459 aa)
	S7RPP1_GLOTA	Uncharacterized protein. (624 aa)
	S7RSQ5_GLOTA	RRM domain-containing protein. (173 aa)
	S7RU83_GLOTA	RNA-binding domain-containing protein. (168 aa)
	S7RUZ5_GLOTA	RING-type domain-containing protein. (1387 aa)
	S7RUZ8_GLOTA	G-patch domain-containing protein. (660 aa)
	S7RVR9_GLOTA	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. (468 aa)
	S7RVU8_GLOTA	RNA-binding domain-containing protein. (450 aa)
	S7RVX3_GLOTA	RNA-binding domain-containing protein. (326 aa)
	S7RVY6_GLOTA	RNA-binding domain-containing protein. (253 aa)
	S7PWI9_GLOTA	RRM domain-containing protein. (169 aa)
	S7PVN4_GLOTA	RRM domain-containing protein. (143 aa)
	S7PV84_GLOTA	Uncharacterized protein. (924 aa)
	S7PUS0_GLOTA	Uncharacterized protein. (1028 aa)
	S7PT11_GLOTA	RRM domain-containing protein. (505 aa)
	S7PXF7_GLOTA	RNA-binding domain-containing protein. (134 aa)
	S7RXB9_GLOTA	RNA-binding domain-containing protein. (148 aa)
	S7RXF4_GLOTA	RNA-binding domain-containing protein. (344 aa)
	S7RXS3_GLOTA	RNA-binding domain-containing protein. (550 aa)
	S7RXY3_GLOTA	Uncharacterized protein. (539 aa)
	S7RZQ4_GLOTA	RRM domain-containing protein. (328 aa)
	S7RZR4_GLOTA	Uncharacterized protein. (958 aa)
	S7RZX0_GLOTA	RRM domain-containing protein. (1003 aa)
	PRT1	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family. (752 aa)
	S7S075_GLOTA	RNA-binding domain-containing protein. (123 aa)
	S7S0L7_GLOTA	Uncharacterized protein. (427 aa)
	S7S1C7_GLOTA	RRM domain-containing protein. (263 aa)
	S7S1Q8_GLOTA	Uncharacterized protein. (309 aa)
	S7S2V4_GLOTA	RRM domain-containing protein. (659 aa)

Your Current Organism:

Gloeophyllum trabeum

NCBI taxonomy Id: 670483
Other names: G. trabeum ATCC 11539, Gloeophyllum trabeum ATCC 11539

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PRT1	S7QDS0_GLOTA	S7S065	S7QDS0	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.	RNA-binding domain-containing protein.	0.410
PRT1	S7QE04_GLOTA	S7S065	S7QE04	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.651
PRT1	S7RHX8_GLOTA	S7S065	S7RHX8	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.	Uncharacterized protein.	0.546
PRT1	S7RII5_GLOTA	S7S065	S7RII5	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.	Uncharacterized protein.	0.544
PRT1	S7RNN5_GLOTA	S7S065	S7RNN5	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.	RRM domain-containing protein.	0.856
PRT1	TIF35	S7S065	S7Q1L1	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.	Eukaryotic translation initiation factor 3 subunit G; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. This subunit can bind 18S rRNA.	0.999
S7PT11_GLOTA	S7PV84_GLOTA	S7PT11	S7PV84	RRM domain-containing protein.	Uncharacterized protein.	0.952
S7PT11_GLOTA	S7PZZ8_GLOTA	S7PT11	S7PZZ8	RRM domain-containing protein.	RRM domain-containing protein.	0.836
S7PT11_GLOTA	S7Q6C4_GLOTA	S7PT11	S7Q6C4	RRM domain-containing protein.	Uncharacterized protein.	0.828
S7PT11_GLOTA	S7Q7N1_GLOTA	S7PT11	S7Q7N1	RRM domain-containing protein.	Uncharacterized protein.	0.418
S7PT11_GLOTA	S7QE04_GLOTA	S7PT11	S7QE04	RRM domain-containing protein.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.454
S7PT11_GLOTA	S7QHC6_GLOTA	S7PT11	S7QHC6	RRM domain-containing protein.	Uncharacterized protein.	0.417
S7PT11_GLOTA	S7QHJ9_GLOTA	S7PT11	S7QHJ9	RRM domain-containing protein.	Uncharacterized protein.	0.435
S7PT11_GLOTA	S7QHU7_GLOTA	S7PT11	S7QHU7	RRM domain-containing protein.	Nuclear cap-binding protein subunit 2.	0.480
S7PT11_GLOTA	S7QL83_GLOTA	S7PT11	S7QL83	RRM domain-containing protein.	RNA-binding domain-containing protein.	0.430
S7PT11_GLOTA	S7RVU8_GLOTA	S7PT11	S7RVU8	RRM domain-containing protein.	RNA-binding domain-containing protein.	0.437
S7PT11_GLOTA	S7RVY6_GLOTA	S7PT11	S7RVY6	RRM domain-containing protein.	RNA-binding domain-containing protein.	0.430
S7PT11_GLOTA	S7RXS3_GLOTA	S7PT11	S7RXS3	RRM domain-containing protein.	RNA-binding domain-containing protein.	0.452
S7PT11_GLOTA	S7RZQ4_GLOTA	S7PT11	S7RZQ4	RRM domain-containing protein.	RRM domain-containing protein.	0.547
S7PT11_GLOTA	TIF35	S7PT11	S7Q1L1	RRM domain-containing protein.	Eukaryotic translation initiation factor 3 subunit G; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. This subunit can bind 18S rRNA.	0.406