51 items (Gloeophyllum trabeum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	S7PV22_GLOTA	Uncharacterized protein. (574 aa)
	S7PWI9_GLOTA	RRM domain-containing protein. (169 aa)
	S7PXE5_GLOTA	PWI domain-containing protein. (301 aa)
	S7PXS0_GLOTA	RRM domain-containing protein. (231 aa)
	S7PXT2_GLOTA	RNA-binding domain-containing protein. (212 aa)
	S7PYJ4_GLOTA	DEAD-domain-containing protein; Belongs to the DEAD box helicase family. (469 aa)
	S7Q016_GLOTA	Serine/threonine-protein phosphatase. (306 aa)
	S7Q0M8_GLOTA	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (204 aa)
	S7Q6G3_GLOTA	RRM domain-containing protein. (214 aa)
	S7QAP5_GLOTA	Uncharacterized protein. (1165 aa)
	S7QCJ0_GLOTA	Uncharacterized protein. (833 aa)
	S7QE04_GLOTA	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (685 aa)
	S7QE67_GLOTA	mRNA cap guanine-N7 methyltransferase. (407 aa)
	S7QEW0_GLOTA	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit; The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment. (696 aa)
	S7QGX8_GLOTA	Cleavage and polyadenylation specificity factor subunit 2. (931 aa)
	S7QHK0_GLOTA	Mago-bind domain-containing protein. (188 aa)
	S7QHU7_GLOTA	Nuclear cap-binding protein subunit 2. (226 aa)
	S7QHY8_GLOTA	RRM domain-containing protein. (257 aa)
	S7QIB8_GLOTA	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (593 aa)
	S7QIJ6_GLOTA	DEAD-domain-containing protein; Belongs to the DEAD box helicase family. (396 aa)
	S7QIP0_GLOTA	Tr-type G domain-containing protein. (454 aa)
	S7QIQ3_GLOTA	Protein DOM34 homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs. (422 aa)
	S7QJ22_GLOTA	Tr-type G domain-containing protein. (372 aa)
	S7QJG6_GLOTA	RNA-binding domain-containing protein. (172 aa)
	S7QKB1_GLOTA	Uncharacterized protein. (877 aa)
	S7QLI0_GLOTA	Fip1 domain-containing protein. (544 aa)
	S7QML6_GLOTA	ARM repeat-containing protein. (594 aa)
	S7QMN8_GLOTA	Uncharacterized protein. (286 aa)
	S7QNL0_GLOTA	P-loop containing nucleoside triphosphate hydrolase protein. (437 aa)
	S7RDA6_GLOTA	RRM domain-containing protein. (230 aa)
	S7RG39_GLOTA	Mago nashi protein. (147 aa)
	S7RGX4_GLOTA	Smg4_UPF3 domain-containing protein. (394 aa)
	S7RHH4_GLOTA	CPSF_A domain-containing protein. (1409 aa)
	S7RHQ0_GLOTA	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (331 aa)
	S7RHX8_GLOTA	Uncharacterized protein. (786 aa)
	S7RJE6_GLOTA	WD40 repeat-like protein. (256 aa)
	S7RMV6_GLOTA	NTF2-like protein. (500 aa)
	S7RP52_GLOTA	Protein phosphatase PP2A regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (452 aa)
	S7RSH8_GLOTA	ARM repeat-containing protein. (1137 aa)
	S7RT68_GLOTA	DWNN-domain-containing protein. (565 aa)
	S7RTJ0_GLOTA	Uncharacterized protein. (427 aa)
	S7RU83_GLOTA	RNA-binding domain-containing protein. (168 aa)
	S7RV53_GLOTA	Peptide chain release factor eRF/aRF subunit 1. (438 aa)
	S7RWL0_GLOTA	Ssu72-like protein. (175 aa)
	S7RX75_GLOTA	CID domain-containing protein. (643 aa)
	S7RXB9_GLOTA	RNA-binding domain-containing protein. (148 aa)
	S7RXZ3_GLOTA	Suf-domain-containing protein. (874 aa)
	S7RZ12_GLOTA	WD40 repeat-like protein. (352 aa)
	S7RZM1_GLOTA	Uncharacterized protein. (288 aa)
	S7S340_GLOTA	NTF2-like protein. (156 aa)
	S7S464_GLOTA	Serine/threonine-protein phosphatase. (502 aa)

Your Current Organism:

Gloeophyllum trabeum

NCBI taxonomy Id: 670483
Other names: G. trabeum ATCC 11539, Gloeophyllum trabeum ATCC 11539

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
S7PV22_GLOTA	S7PXS0_GLOTA	S7PV22	S7PXS0	Uncharacterized protein.	RRM domain-containing protein.	0.474
S7PV22_GLOTA	S7PXT2_GLOTA	S7PV22	S7PXT2	Uncharacterized protein.	RNA-binding domain-containing protein.	0.474
S7PV22_GLOTA	S7PYJ4_GLOTA	S7PV22	S7PYJ4	Uncharacterized protein.	DEAD-domain-containing protein; Belongs to the DEAD box helicase family.	0.975
S7PV22_GLOTA	S7Q6G3_GLOTA	S7PV22	S7Q6G3	Uncharacterized protein.	RRM domain-containing protein.	0.474
S7PV22_GLOTA	S7QHU7_GLOTA	S7PV22	S7QHU7	Uncharacterized protein.	Nuclear cap-binding protein subunit 2.	0.766
S7PV22_GLOTA	S7QIJ6_GLOTA	S7PV22	S7QIJ6	Uncharacterized protein.	DEAD-domain-containing protein; Belongs to the DEAD box helicase family.	0.703
S7PV22_GLOTA	S7QKB1_GLOTA	S7PV22	S7QKB1	Uncharacterized protein.	Uncharacterized protein.	0.786
S7PV22_GLOTA	S7QNL0_GLOTA	S7PV22	S7QNL0	Uncharacterized protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.482
S7PV22_GLOTA	S7RDA6_GLOTA	S7PV22	S7RDA6	Uncharacterized protein.	RRM domain-containing protein.	0.474
S7PV22_GLOTA	S7RG39_GLOTA	S7PV22	S7RG39	Uncharacterized protein.	Mago nashi protein.	0.698
S7PV22_GLOTA	S7RGX4_GLOTA	S7PV22	S7RGX4	Uncharacterized protein.	Smg4_UPF3 domain-containing protein.	0.608
S7PV22_GLOTA	S7RMV6_GLOTA	S7PV22	S7RMV6	Uncharacterized protein.	NTF2-like protein.	0.713
S7PV22_GLOTA	S7RXB9_GLOTA	S7PV22	S7RXB9	Uncharacterized protein.	RNA-binding domain-containing protein.	0.570
S7PV22_GLOTA	S7S340_GLOTA	S7PV22	S7S340	Uncharacterized protein.	NTF2-like protein.	0.710
S7PWI9_GLOTA	S7PXE5_GLOTA	S7PWI9	S7PXE5	RRM domain-containing protein.	PWI domain-containing protein.	0.506
S7PWI9_GLOTA	S7PXS0_GLOTA	S7PWI9	S7PXS0	RRM domain-containing protein.	RRM domain-containing protein.	0.546
S7PWI9_GLOTA	S7PXT2_GLOTA	S7PWI9	S7PXT2	RRM domain-containing protein.	RNA-binding domain-containing protein.	0.548
S7PWI9_GLOTA	S7Q0M8_GLOTA	S7PWI9	S7Q0M8	RRM domain-containing protein.	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]	0.842
S7PWI9_GLOTA	S7Q6G3_GLOTA	S7PWI9	S7Q6G3	RRM domain-containing protein.	RRM domain-containing protein.	0.548
S7PWI9_GLOTA	S7QAP5_GLOTA	S7PWI9	S7QAP5	RRM domain-containing protein.	Uncharacterized protein.	0.990