12 items (Wallemia mellicola) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	I4Y7K4_WALMC	Ubiquitin/40s ribosomal protein S27a fusion. (158 aa)
	I4YBG3_WALMC	Uncharacterized protein. (392 aa)
	I4YC37_WALMC	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (599 aa)
	I4YD86_WALMC	AAA domain-containing protein. (459 aa)
	I4YE28_WALMC	Rve-domain-containing protein. (177 aa)
	I4YFA1_WALMC	Replication factor A protein 3. (111 aa)
	I4YGX5_WALMC	NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30. (202 aa)
	I4YJE7_WALMC	DNA/RNA polymerase. (584 aa)
	I4YGZ8_WALMC	FAD/NAD(P)-binding domain-containing protein. (503 aa)
	I4Y5E2_WALMC	Ubiquitin. (701 aa)
	I4Y615_WALMC	CHY-type domain-containing protein. (121 aa)
	I4Y638_WALMC	AAA-domain-containing protein. (729 aa)

Your Current Organism:

Wallemia mellicola

NCBI taxonomy Id: 671144
Other names: W. mellicola CBS 633.66, Wallemia mellicola CBS 633.66

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I4Y5E2_WALMC	I4Y615_WALMC	I4Y5E2	I4Y615	Ubiquitin.	CHY-type domain-containing protein.	0.636
I4Y5E2_WALMC	I4Y638_WALMC	I4Y5E2	I4Y638	Ubiquitin.	AAA-domain-containing protein.	0.919
I4Y5E2_WALMC	I4Y7K4_WALMC	I4Y5E2	I4Y7K4	Ubiquitin.	Ubiquitin/40s ribosomal protein S27a fusion.	0.991
I4Y5E2_WALMC	I4YC37_WALMC	I4Y5E2	I4YC37	Ubiquitin.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.618
I4Y5E2_WALMC	I4YD86_WALMC	I4Y5E2	I4YD86	Ubiquitin.	AAA domain-containing protein.	0.511
I4Y5E2_WALMC	I4YGX5_WALMC	I4Y5E2	I4YGX5	Ubiquitin.	NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30.	0.915
I4Y5E2_WALMC	I4YJE7_WALMC	I4Y5E2	I4YJE7	Ubiquitin.	DNA/RNA polymerase.	0.645
I4Y615_WALMC	I4Y5E2_WALMC	I4Y615	I4Y5E2	CHY-type domain-containing protein.	Ubiquitin.	0.636
I4Y615_WALMC	I4Y7K4_WALMC	I4Y615	I4Y7K4	CHY-type domain-containing protein.	Ubiquitin/40s ribosomal protein S27a fusion.	0.632
I4Y615_WALMC	I4YGX5_WALMC	I4Y615	I4YGX5	CHY-type domain-containing protein.	NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30.	0.632
I4Y615_WALMC	I4YJE7_WALMC	I4Y615	I4YJE7	CHY-type domain-containing protein.	DNA/RNA polymerase.	0.706
I4Y638_WALMC	I4Y5E2_WALMC	I4Y638	I4Y5E2	AAA-domain-containing protein.	Ubiquitin.	0.919
I4Y638_WALMC	I4Y7K4_WALMC	I4Y638	I4Y7K4	AAA-domain-containing protein.	Ubiquitin/40s ribosomal protein S27a fusion.	0.623
I4Y638_WALMC	I4YC37_WALMC	I4Y638	I4YC37	AAA-domain-containing protein.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.475
I4Y638_WALMC	I4YD86_WALMC	I4Y638	I4YD86	AAA-domain-containing protein.	AAA domain-containing protein.	0.513
I4Y638_WALMC	I4YGX5_WALMC	I4Y638	I4YGX5	AAA-domain-containing protein.	NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30.	0.623
I4Y638_WALMC	I4YJE7_WALMC	I4Y638	I4YJE7	AAA-domain-containing protein.	DNA/RNA polymerase.	0.669
I4Y7K4_WALMC	I4Y5E2_WALMC	I4Y7K4	I4Y5E2	Ubiquitin/40s ribosomal protein S27a fusion.	Ubiquitin.	0.991
I4Y7K4_WALMC	I4Y615_WALMC	I4Y7K4	I4Y615	Ubiquitin/40s ribosomal protein S27a fusion.	CHY-type domain-containing protein.	0.632
I4Y7K4_WALMC	I4Y638_WALMC	I4Y7K4	I4Y638	Ubiquitin/40s ribosomal protein S27a fusion.	AAA-domain-containing protein.	0.623