6 items (Wallemia mellicola) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	I4YFE3_WALMC	Asparaginyl-tRNA synthetase. (575 aa)
	I4YE77_WALMC	ATP-dependent DNA helicase. (1115 aa)
	I4YDJ6_WALMC	DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (797 aa)
	I4YJP4_WALMC	SAE2 domain-containing protein. (90 aa)
	I4YG30_WALMC	DUF1767 domain-containing protein. (213 aa)
	I4YFL1_WALMC	Uncharacterized protein. (811 aa)

Your Current Organism:

Wallemia mellicola

NCBI taxonomy Id: 671144
Other names: W. mellicola CBS 633.66, Wallemia mellicola CBS 633.66

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I4YDJ6_WALMC	I4YE77_WALMC	I4YDJ6	I4YE77	DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family.	ATP-dependent DNA helicase.	0.998
I4YDJ6_WALMC	I4YFE3_WALMC	I4YDJ6	I4YFE3	DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family.	Asparaginyl-tRNA synthetase.	0.674
I4YDJ6_WALMC	I4YFL1_WALMC	I4YDJ6	I4YFL1	DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family.	Uncharacterized protein.	0.496
I4YDJ6_WALMC	I4YG30_WALMC	I4YDJ6	I4YG30	DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family.	DUF1767 domain-containing protein.	0.998
I4YDJ6_WALMC	I4YJP4_WALMC	I4YDJ6	I4YJP4	DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family.	SAE2 domain-containing protein.	0.680
I4YE77_WALMC	I4YDJ6_WALMC	I4YE77	I4YDJ6	ATP-dependent DNA helicase.	DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family.	0.998
I4YE77_WALMC	I4YFE3_WALMC	I4YE77	I4YFE3	ATP-dependent DNA helicase.	Asparaginyl-tRNA synthetase.	0.723
I4YE77_WALMC	I4YFL1_WALMC	I4YE77	I4YFL1	ATP-dependent DNA helicase.	Uncharacterized protein.	0.752
I4YE77_WALMC	I4YG30_WALMC	I4YE77	I4YG30	ATP-dependent DNA helicase.	DUF1767 domain-containing protein.	0.982
I4YE77_WALMC	I4YJP4_WALMC	I4YE77	I4YJP4	ATP-dependent DNA helicase.	SAE2 domain-containing protein.	0.784
I4YFE3_WALMC	I4YDJ6_WALMC	I4YFE3	I4YDJ6	Asparaginyl-tRNA synthetase.	DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family.	0.674
I4YFE3_WALMC	I4YE77_WALMC	I4YFE3	I4YE77	Asparaginyl-tRNA synthetase.	ATP-dependent DNA helicase.	0.723
I4YFE3_WALMC	I4YFL1_WALMC	I4YFE3	I4YFL1	Asparaginyl-tRNA synthetase.	Uncharacterized protein.	0.474
I4YFE3_WALMC	I4YG30_WALMC	I4YFE3	I4YG30	Asparaginyl-tRNA synthetase.	DUF1767 domain-containing protein.	0.591
I4YFE3_WALMC	I4YJP4_WALMC	I4YFE3	I4YJP4	Asparaginyl-tRNA synthetase.	SAE2 domain-containing protein.	0.564
I4YFL1_WALMC	I4YDJ6_WALMC	I4YFL1	I4YDJ6	Uncharacterized protein.	DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family.	0.496
I4YFL1_WALMC	I4YE77_WALMC	I4YFL1	I4YE77	Uncharacterized protein.	ATP-dependent DNA helicase.	0.752
I4YFL1_WALMC	I4YFE3_WALMC	I4YFL1	I4YFE3	Uncharacterized protein.	Asparaginyl-tRNA synthetase.	0.474
I4YFL1_WALMC	I4YG30_WALMC	I4YFL1	I4YG30	Uncharacterized protein.	DUF1767 domain-containing protein.	0.570
I4YG30_WALMC	I4YDJ6_WALMC	I4YG30	I4YDJ6	DUF1767 domain-containing protein.	DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family.	0.998