40 items (Wallemia mellicola) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	I4Y555_WALMC	NPL4-domain-containing protein. (649 aa)
	I4Y5E2_WALMC	Ubiquitin. (701 aa)
	I4Y5X3_WALMC	WD40 repeat-like protein. (577 aa)
	I4YAI6_WALMC	DNA damage-binding protein CMR1; DNA-binding protein that binds to both single- and double- stranded DNA. Binds preferentially to UV-damaged DNA. May be involved in DNA-metabolic processes. (545 aa)
	I4YBQ6_WALMC	WD40 repeat-like protein. (538 aa)
	I4YBR1_WALMC	RNI-like protein. (555 aa)
	I4YCA0_WALMC	WD40 repeat-like protein. (434 aa)
	I4YD87_WALMC	Ubiquitin-activating enzyme E1. (1020 aa)
	I4YDQ2_WALMC	WD40 repeat-like protein. (366 aa)
	I4YDZ0_WALMC	UFD1-domain-containing protein. (449 aa)
	I4YDZ7_WALMC	Ubiquitin family protein. (79 aa)
	I4YE65_WALMC	Ubiquitin carboxyl-terminal hydrolase. (250 aa)
	I4YF23_WALMC	NUC173-domain-containing protein. (1254 aa)
	I4YF40_WALMC	WD40 repeat-like protein. (372 aa)
	I4YFM8_WALMC	WD40 repeat-like protein. (591 aa)
	I4YFW6_WALMC	RING-box protein 1. (107 aa)
	I4YG53_WALMC	Uncharacterized protein. (526 aa)
	I4YGX5_WALMC	NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30. (202 aa)
	I4YGY3_WALMC	Uncharacterized protein. (208 aa)
	I4YH95_WALMC	RNI-like protein. (508 aa)
	I4YHJ4_WALMC	Uncharacterized protein. (699 aa)
	I4YIJ5_WALMC	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (177 aa)
	I4YIP8_WALMC	Uncharacterized protein. (137 aa)
	I4YIV9_WALMC	NEDD8-activating enzyme E1 regulatory subunit; Regulatory subunit of the dimeric UBA3-ULA1 E1 enzyme. (541 aa)
	I4YJY8_WALMC	WD40 repeat-like protein. (268 aa)
	I4Y633_WALMC	AAA ATPase; Belongs to the AAA ATPase family. (818 aa)
	I4Y638_WALMC	AAA-domain-containing protein. (729 aa)
	I4Y6G3_WALMC	TIP120-domain-containing protein. (1201 aa)
	I4Y6G7_WALMC	Uncharacterized protein. (358 aa)
	I4Y6J1_WALMC	CPSF_A domain-containing protein. (986 aa)
	I4Y6N8_WALMC	WD40 repeat-like protein. (601 aa)
	I4Y706_WALMC	CULLIN_2 domain-containing protein; Belongs to the cullin family. (843 aa)
	I4Y751_WALMC	RNI-like protein. (594 aa)
	I4Y7K4_WALMC	Ubiquitin/40s ribosomal protein S27a fusion. (158 aa)
	I4Y8F2_WALMC	WD40 repeat-like protein. (404 aa)
	Tup12	WD40 repeat-like protein. (594 aa)
	I4Y919_WALMC	JAB_MPN domain-containing protein. (263 aa)
	I4Y9A0_WALMC	E2_bind domain-containing protein. (412 aa)
	I4Y9D7_WALMC	Uncharacterized protein. (444 aa)
	I4Y9Q7_WALMC	PCI-domain-containing protein. (478 aa)

Your Current Organism:

Wallemia mellicola

NCBI taxonomy Id: 671144
Other names: W. mellicola CBS 633.66, Wallemia mellicola CBS 633.66

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I4Y555_WALMC	I4Y5E2_WALMC	I4Y555	I4Y5E2	NPL4-domain-containing protein.	Ubiquitin.	0.988
I4Y555_WALMC	I4Y633_WALMC	I4Y555	I4Y633	NPL4-domain-containing protein.	AAA ATPase; Belongs to the AAA ATPase family.	0.999
I4Y555_WALMC	I4Y638_WALMC	I4Y555	I4Y638	NPL4-domain-containing protein.	AAA-domain-containing protein.	0.946
I4Y555_WALMC	I4Y7K4_WALMC	I4Y555	I4Y7K4	NPL4-domain-containing protein.	Ubiquitin/40s ribosomal protein S27a fusion.	0.905
I4Y555_WALMC	I4YD87_WALMC	I4Y555	I4YD87	NPL4-domain-containing protein.	Ubiquitin-activating enzyme E1.	0.470
I4Y555_WALMC	I4YDZ0_WALMC	I4Y555	I4YDZ0	NPL4-domain-containing protein.	UFD1-domain-containing protein.	0.999
I4Y555_WALMC	I4YDZ7_WALMC	I4Y555	I4YDZ7	NPL4-domain-containing protein.	Ubiquitin family protein.	0.636
I4Y555_WALMC	I4YFW6_WALMC	I4Y555	I4YFW6	NPL4-domain-containing protein.	RING-box protein 1.	0.644
I4Y555_WALMC	I4YGX5_WALMC	I4Y555	I4YGX5	NPL4-domain-containing protein.	NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30.	0.905
I4Y5E2_WALMC	I4Y555_WALMC	I4Y5E2	I4Y555	Ubiquitin.	NPL4-domain-containing protein.	0.988
I4Y5E2_WALMC	I4Y633_WALMC	I4Y5E2	I4Y633	Ubiquitin.	AAA ATPase; Belongs to the AAA ATPase family.	0.965
I4Y5E2_WALMC	I4Y638_WALMC	I4Y5E2	I4Y638	Ubiquitin.	AAA-domain-containing protein.	0.919
I4Y5E2_WALMC	I4Y6G3_WALMC	I4Y5E2	I4Y6G3	Ubiquitin.	TIP120-domain-containing protein.	0.402
I4Y5E2_WALMC	I4Y6J1_WALMC	I4Y5E2	I4Y6J1	Ubiquitin.	CPSF_A domain-containing protein.	0.689
I4Y5E2_WALMC	I4Y6N8_WALMC	I4Y5E2	I4Y6N8	Ubiquitin.	WD40 repeat-like protein.	0.718
I4Y5E2_WALMC	I4Y706_WALMC	I4Y5E2	I4Y706	Ubiquitin.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.707
I4Y5E2_WALMC	I4Y751_WALMC	I4Y5E2	I4Y751	Ubiquitin.	RNI-like protein.	0.723
I4Y5E2_WALMC	I4Y7K4_WALMC	I4Y5E2	I4Y7K4	Ubiquitin.	Ubiquitin/40s ribosomal protein S27a fusion.	0.991
I4Y5E2_WALMC	I4Y919_WALMC	I4Y5E2	I4Y919	Ubiquitin.	JAB_MPN domain-containing protein.	0.726
I4Y5E2_WALMC	I4Y9A0_WALMC	I4Y5E2	I4Y9A0	Ubiquitin.	E2_bind domain-containing protein.	0.754