6 items (Wallemia mellicola) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	I4Y788_WALMC	Thioredoxin-dependent peroxide reductase. (195 aa)
	I4Y5E2_WALMC	Ubiquitin. (701 aa)
	I4Y7K4_WALMC	Ubiquitin/40s ribosomal protein S27a fusion. (158 aa)
	I4YAC4_WALMC	Sulfiredoxin. (114 aa)
	I4YFW6_WALMC	RING-box protein 1. (107 aa)
	I4YGX5_WALMC	NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30. (202 aa)

Your Current Organism:

Wallemia mellicola

NCBI taxonomy Id: 671144
Other names: W. mellicola CBS 633.66, Wallemia mellicola CBS 633.66

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I4Y5E2_WALMC	I4Y7K4_WALMC	I4Y5E2	I4Y7K4	Ubiquitin.	Ubiquitin/40s ribosomal protein S27a fusion.	0.991
I4Y5E2_WALMC	I4YFW6_WALMC	I4Y5E2	I4YFW6	Ubiquitin.	RING-box protein 1.	0.901
I4Y5E2_WALMC	I4YGX5_WALMC	I4Y5E2	I4YGX5	Ubiquitin.	NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30.	0.915
I4Y788_WALMC	I4YAC4_WALMC	I4Y788	I4YAC4	Thioredoxin-dependent peroxide reductase.	Sulfiredoxin.	0.981
I4Y7K4_WALMC	I4Y5E2_WALMC	I4Y7K4	I4Y5E2	Ubiquitin/40s ribosomal protein S27a fusion.	Ubiquitin.	0.991
I4Y7K4_WALMC	I4YFW6_WALMC	I4Y7K4	I4YFW6	Ubiquitin/40s ribosomal protein S27a fusion.	RING-box protein 1.	0.832
I4YAC4_WALMC	I4Y788_WALMC	I4YAC4	I4Y788	Sulfiredoxin.	Thioredoxin-dependent peroxide reductase.	0.981
I4YFW6_WALMC	I4Y5E2_WALMC	I4YFW6	I4Y5E2	RING-box protein 1.	Ubiquitin.	0.901
I4YFW6_WALMC	I4Y7K4_WALMC	I4YFW6	I4Y7K4	RING-box protein 1.	Ubiquitin/40s ribosomal protein S27a fusion.	0.832
I4YFW6_WALMC	I4YGX5_WALMC	I4YFW6	I4YGX5	RING-box protein 1.	NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30.	0.832
I4YGX5_WALMC	I4Y5E2_WALMC	I4YGX5	I4Y5E2	NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30.	Ubiquitin.	0.915
I4YGX5_WALMC	I4YFW6_WALMC	I4YGX5	I4YFW6	NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30.	RING-box protein 1.	0.832