(73 nodes) Protein secretion network (Vibrio vulnificus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AIL70183.1	V10 pilin. (173 aa)
	AIL69873.1	Pilus assembly protein PilW. (222 aa)
	AIL69872.1	Pilus assembly protein FimT. (170 aa)
	AIL69824.1	Potassium channel protein. (325 aa)
	AIL69611.1	General secretion pathway protein A. (718 aa)
	AIL69495.1	Hypothetical protein. (1251 aa)
	AIL70857.1	Flp pilus assembly protein, secretin CpaC; Belongs to the bacterial secretin family. (462 aa)
	AIL69494.1	Outer membrane protein. (571 aa)
	AIL69420.1	S23 ribosomal protein. (119 aa)
	traD	Putative conjugative transfer protein TraD. (658 aa)
	AIL69305.1	Type II secretion pathway protein N. (253 aa)
	AIL69304.1	Type II secretory pathway, component EpsM; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. (163 aa)
	AIL69303.1	Type II secretory pathway, component EpsL; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. (399 aa)
	AIL69301.1	Type II secretory pathway, component EpsJ. (233 aa)
	AIL69300.1	Type II secretory pathway, pseudopilin EpsI. (120 aa)
	AIL69299.1	Type II secretory pathway, pseudopilin EpsH. (200 aa)
	AIL69298.1	Type II secretory pathway, pseudopilin EpsG. (147 aa)
	AIL69297.1	Type II secretory pathway, component EpsF. (405 aa)
	AIL69295.1	Type II secretory pathway, component EpsD. (673 aa)
	AIL69294.1	Type II secretory pathway, component EpsC. (309 aa)
	AIL69200.1	Membrane protein. (197 aa)
	pilA	Type IV pilin PilA; Belongs to the N-Me-Phe pilin family. (155 aa)
	pilC	Type IV pilus (Tfp) assembly protein PilC. (408 aa)
	AIL71737.1	MSHA pilin protein MshD. (188 aa)
	AIL71738.1	MSHA pilin protein MshC. (165 aa)
	flhB	Flagellar biosynthesis protein FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family. (376 aa)
	fliQ	Flagellar biosynthesis protein FliQ; Role in flagellar biosynthesis. Belongs to the FliQ/MopD/SpaQ family. (89 aa)
	fliP	Flagellar biosynthesis protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family. (289 aa)
	fliI	Flagellum-specific ATP synthase. (440 aa)
	AIL71455.1	Flp pilus assembly protein, secretin CpaC; Belongs to the bacterial secretin family. (488 aa)
	secG	Preprotein translocase subunit SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. (110 aa)
	AIL71739.1	MSHA pilin protein MshA. (156 aa)
	AIL71740.1	MSHA pilin protein MshB. (192 aa)
	AIL71742.1	MSHA biogenesis protein MshG. (406 aa)
	AIL71746.1	MSHA biogenesis protein MshL. (548 aa)
	AIL71748.1	MSHA biogenesis protein MshJ. (216 aa)
	pilQ	Type IV pilus (Tfp) assembly protein PilQ. (588 aa)
	AIL71916.1	Multiple antibiotic transporter. (207 aa)
	secE	Preprotein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation; Belongs to the SecE/SEC61-gamma family. (126 aa)
	AIL72277.1	Hypothetical protein. (282 aa)
	AIL72381.1	RTX transport protein. (442 aa)
	AIL72434.1	ABC transporter. (529 aa)
	AIL72435.1	Membrane-fusion protein. (446 aa)
	AIL72494.1	Histidine kinase. (157 aa)
	AIL72657.1	Rough colony protein RcpA; Belongs to the bacterial secretin family. (441 aa)
	AIL72963.1	MSHA pilin protein MshA. (184 aa)
	AIL72977.1	Type VI secretion protein. (96 aa)
	AIL72978.1	Type IV secretion protein Rhs. (611 aa)
	impG	Type VI secretion system protein ImpG. (929 aa)
	AIL72984.1	Type VI secretion protein. (497 aa)
	impC	Type VI secretion system protein ImpC. (497 aa)
	impB	Type VI secretion system protein ImpB. (170 aa)
	impA	Type VI secretion system protein ImpA. (377 aa)
	impL	Type VI secretion system protein ImpL. (1089 aa)
	icmF	Type VI secretion protein IcmF. (85 aa)
	impK	Type VI secretion system protein ImpK. (442 aa)
	impJ	Type VI secretion system protein ImpJ. (440 aa)
	vasD	Type VI secretion system protein VasD. (151 aa)
	AIL73032.1	RTX toxin transporter. (701 aa)
	AIL73033.1	RTX toxin transporter. (453 aa)
	AIL73034.1	RTX toxin secretion ATP-binding protein. (722 aa)
	AIL73350.1	Hypothetical protein. (560 aa)
	AIL73420.1	Fluoroquinolone resistance protein. (218 aa)
	AIL73448.1	Hypothetical protein. (786 aa)
	AIL73566.1	Membrane-fusion protein. (463 aa)
	AIL70879.1	V10 pilin. (163 aa)
	AIL71028.1	MSHA biogenesis protein MshA. (178 aa)
	AIL71123.1	Hypothetical protein. (906 aa)
	flhA	Flagellar biosynthesis protein FlhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family. (700 aa)
	AIL70219.1	Hypothetical protein. (130 aa)
	AIL70185.1	Membrane protein. (212 aa)
	AIL70124.1	DNA uptake protein. (100 aa)
	AIL69302.1	Type II secretory pathway, component EpsK. (340 aa)

Your Current Organism:

Vibrio vulnificus

NCBI taxonomy Id: 672
Other names: ATCC 27562, BCRC 12905, Beneckea vulnifica, CAIM 610, CCRC 12905, CCRC:12905, CCUG 13448, CCUG 16394, CIP 75.4, CIP:75.04, DSM 10143, IFO 15645, JCM 3725, LMG 13545, LMG:13545, NBRC 15645, NCIMB 2046, NCTC 13647, V. vulnificus, strain 324

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIL69294.1	AIL69295.1	VV93_v1c01950	VV93_v1c01960	Type II secretory pathway, component EpsC.	Type II secretory pathway, component EpsD.	0.992
AIL69294.1	AIL69297.1	VV93_v1c01950	VV93_v1c01980	Type II secretory pathway, component EpsC.	Type II secretory pathway, component EpsF.	0.847
AIL69294.1	AIL69298.1	VV93_v1c01950	VV93_v1c01990	Type II secretory pathway, component EpsC.	Type II secretory pathway, pseudopilin EpsG.	0.861
AIL69294.1	AIL69299.1	VV93_v1c01950	VV93_v1c02000	Type II secretory pathway, component EpsC.	Type II secretory pathway, pseudopilin EpsH.	0.883
AIL69294.1	AIL69300.1	VV93_v1c01950	VV93_v1c02010	Type II secretory pathway, component EpsC.	Type II secretory pathway, pseudopilin EpsI.	0.936
AIL69294.1	AIL69301.1	VV93_v1c01950	VV93_v1c02020	Type II secretory pathway, component EpsC.	Type II secretory pathway, component EpsJ.	0.929
AIL69294.1	AIL69302.1	VV93_v1c01950	VV93_v1c02030	Type II secretory pathway, component EpsC.	Type II secretory pathway, component EpsK.	0.918
AIL69294.1	AIL69303.1	VV93_v1c01950	VV93_v1c02040	Type II secretory pathway, component EpsC.	Type II secretory pathway, component EpsL; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.	0.918
AIL69294.1	AIL69304.1	VV93_v1c01950	VV93_v1c02050	Type II secretory pathway, component EpsC.	Type II secretory pathway, component EpsM; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.	0.905
AIL69294.1	AIL69305.1	VV93_v1c01950	VV93_v1c02060	Type II secretory pathway, component EpsC.	Type II secretion pathway protein N.	0.903
AIL69294.1	AIL69611.1	VV93_v1c01950	VV93_v1c05140	Type II secretory pathway, component EpsC.	General secretion pathway protein A.	0.440
AIL69294.1	AIL71746.1	VV93_v1c01950	VV93_v1c26700	Type II secretory pathway, component EpsC.	MSHA biogenesis protein MshL.	0.904
AIL69294.1	AIL71748.1	VV93_v1c01950	VV93_v1c26720	Type II secretory pathway, component EpsC.	MSHA biogenesis protein MshJ.	0.425
AIL69295.1	AIL69294.1	VV93_v1c01960	VV93_v1c01950	Type II secretory pathway, component EpsD.	Type II secretory pathway, component EpsC.	0.992
AIL69295.1	AIL69297.1	VV93_v1c01960	VV93_v1c01980	Type II secretory pathway, component EpsD.	Type II secretory pathway, component EpsF.	0.957
AIL69295.1	AIL69298.1	VV93_v1c01960	VV93_v1c01990	Type II secretory pathway, component EpsD.	Type II secretory pathway, pseudopilin EpsG.	0.967
AIL69295.1	AIL69299.1	VV93_v1c01960	VV93_v1c02000	Type II secretory pathway, component EpsD.	Type II secretory pathway, pseudopilin EpsH.	0.909
AIL69295.1	AIL69300.1	VV93_v1c01960	VV93_v1c02010	Type II secretory pathway, component EpsD.	Type II secretory pathway, pseudopilin EpsI.	0.933
AIL69295.1	AIL69301.1	VV93_v1c01960	VV93_v1c02020	Type II secretory pathway, component EpsD.	Type II secretory pathway, component EpsJ.	0.949
AIL69295.1	AIL69302.1	VV93_v1c01960	VV93_v1c02030	Type II secretory pathway, component EpsD.	Type II secretory pathway, component EpsK.	0.929

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