(16 nodes) Type II protein secretion system complex network (Vibrio vulnificus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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Others

textmining

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protein homology

Your Input:
	AIL69295.1	Type II secretory pathway, component EpsD. (673 aa)
	pilO	Type IV pilus (Tfp) assembly protein PilO. (196 aa)
	AIL71748.1	MSHA biogenesis protein MshJ. (216 aa)
	AIL71743.1	MSHA biogenesis protein MshE. (574 aa)
	AIL71737.1	MSHA pilin protein MshD. (188 aa)
	pilB	Type IV pilus (Tfp) assembly protein PilB. (562 aa)
	AIL70124.1	DNA uptake protein. (100 aa)
	AIL69872.1	Pilus assembly protein FimT. (170 aa)
	AIL69304.1	Type II secretory pathway, component EpsM; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. (163 aa)
	AIL69302.1	Type II secretory pathway, component EpsK. (340 aa)
	AIL69301.1	Type II secretory pathway, component EpsJ. (233 aa)
	AIL69300.1	Type II secretory pathway, pseudopilin EpsI. (120 aa)
	AIL69299.1	Type II secretory pathway, pseudopilin EpsH. (200 aa)
	AIL69298.1	Type II secretory pathway, pseudopilin EpsG. (147 aa)
	AIL69296.1	Type II secretory pathway, ATPase EpsE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. (499 aa)
	AIL69294.1	Type II secretory pathway, component EpsC. (309 aa)

Your Current Organism:

Vibrio vulnificus

NCBI taxonomy Id: 672
Other names: ATCC 27562, BCRC 12905, Beneckea vulnifica, CAIM 610, CCRC 12905, CCRC:12905, CCUG 13448, CCUG 16394, CIP 75.4, CIP:75.04, DSM 10143, IFO 15645, JCM 3725, LMG 13545, LMG:13545, NBRC 15645, NCIMB 2046, NCTC 13647, V. vulnificus, strain 324

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIL69294.1	AIL69295.1	VV93_v1c01950	VV93_v1c01960	Type II secretory pathway, component EpsC.	Type II secretory pathway, component EpsD.	0.992
AIL69294.1	AIL69296.1	VV93_v1c01950	VV93_v1c01970	Type II secretory pathway, component EpsC.	Type II secretory pathway, ATPase EpsE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.	0.781
AIL69294.1	AIL69298.1	VV93_v1c01950	VV93_v1c01990	Type II secretory pathway, component EpsC.	Type II secretory pathway, pseudopilin EpsG.	0.861
AIL69294.1	AIL69299.1	VV93_v1c01950	VV93_v1c02000	Type II secretory pathway, component EpsC.	Type II secretory pathway, pseudopilin EpsH.	0.883
AIL69294.1	AIL69300.1	VV93_v1c01950	VV93_v1c02010	Type II secretory pathway, component EpsC.	Type II secretory pathway, pseudopilin EpsI.	0.936
AIL69294.1	AIL69301.1	VV93_v1c01950	VV93_v1c02020	Type II secretory pathway, component EpsC.	Type II secretory pathway, component EpsJ.	0.929
AIL69294.1	AIL69302.1	VV93_v1c01950	VV93_v1c02030	Type II secretory pathway, component EpsC.	Type II secretory pathway, component EpsK.	0.918
AIL69294.1	AIL69304.1	VV93_v1c01950	VV93_v1c02050	Type II secretory pathway, component EpsC.	Type II secretory pathway, component EpsM; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.	0.905
AIL69294.1	AIL71748.1	VV93_v1c01950	VV93_v1c26720	Type II secretory pathway, component EpsC.	MSHA biogenesis protein MshJ.	0.425
AIL69295.1	AIL69294.1	VV93_v1c01960	VV93_v1c01950	Type II secretory pathway, component EpsD.	Type II secretory pathway, component EpsC.	0.992
AIL69295.1	AIL69296.1	VV93_v1c01960	VV93_v1c01970	Type II secretory pathway, component EpsD.	Type II secretory pathway, ATPase EpsE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.	0.939
AIL69295.1	AIL69298.1	VV93_v1c01960	VV93_v1c01990	Type II secretory pathway, component EpsD.	Type II secretory pathway, pseudopilin EpsG.	0.967
AIL69295.1	AIL69299.1	VV93_v1c01960	VV93_v1c02000	Type II secretory pathway, component EpsD.	Type II secretory pathway, pseudopilin EpsH.	0.909
AIL69295.1	AIL69300.1	VV93_v1c01960	VV93_v1c02010	Type II secretory pathway, component EpsD.	Type II secretory pathway, pseudopilin EpsI.	0.933
AIL69295.1	AIL69301.1	VV93_v1c01960	VV93_v1c02020	Type II secretory pathway, component EpsD.	Type II secretory pathway, component EpsJ.	0.949
AIL69295.1	AIL69302.1	VV93_v1c01960	VV93_v1c02030	Type II secretory pathway, component EpsD.	Type II secretory pathway, component EpsK.	0.929
AIL69295.1	AIL69304.1	VV93_v1c01960	VV93_v1c02050	Type II secretory pathway, component EpsD.	Type II secretory pathway, component EpsM; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.	0.915
AIL69295.1	AIL71743.1	VV93_v1c01960	VV93_v1c26670	Type II secretory pathway, component EpsD.	MSHA biogenesis protein MshE.	0.501
AIL69295.1	pilB	VV93_v1c01960	VV93_v1c24900	Type II secretory pathway, component EpsD.	Type IV pilus (Tfp) assembly protein PilB.	0.450
AIL69296.1	AIL69294.1	VV93_v1c01970	VV93_v1c01950	Type II secretory pathway, ATPase EpsE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.	Type II secretory pathway, component EpsC.	0.781

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